Superfund publications

SRP_Scoop

The Superfund Scoop is the e-newsletter of the UNC Superfund Research Program. It is issued three times a year and features significant program accomplishments and highlights the work of several projects and cores in each issue. The newsletter is distributed to elected officials, environmental and community-based organizations, various governmental contacts, other SRPs, etc.

Newsletter Archive

Fall 2014: Issue #17

  • Understanding chemical exposure from the inside, out
  • Leveraging resources to better understand chemical exposures
  • Toxic metals in well water & links to birth defects in children
  • Optimizing cleanup of PAH-contaminated soil
  • Partnering to educate anglers about complex fish consumption advisories
  • Aitken, Adrion mentor NC School of Science and Mathematics student
  • RTC staff present at national meetings
  • Teachers explore connections between water quality & health
  • New lessons bring advanced biology, environmental science concepts to high schoolers
  • Rusyn departs UNC
  • Fry named UNC SRP Deputy Director
  • Trainee Spotlight: Samantha Tulenko
  • Aitken presents bioremediation research in South Korea

Spring 2014: Issue #16

  • Scientists studying effects of Dan River coal ash spill
  • Study links prenatal exposure to arsenic to disease susceptibility later in life
  • SRP trainee develops chemical risk assessment interface
  • UNC, Duke collaborate to connect journalists with Superfund science
  • Fry shares science with the public during Carolina Science Cafe
  • RTC staff, trainees host Science Expo booth
  • Fry presents research at CDC Conference

Fall 2013: Issue #15

  • Using crowdsourcing to understand the role of genetics in chemical toxicity
  • Using systems biology to prevent arsenic-induced birth defects
  • Building research collaborations
  • Translating faculty research: “A Sticky Situation” exhibit opens
  • Improving fish consumption advisories to protect maternal and child health
  • Connecting new audiences to Superfund research
  • Bringing water quality and Superfund into the classroom
  • Follow @UNC_SRP on Twitter!
  • Rusyn appointed to NRC councils for formaldehyde, styrene
  • SRP Trainee selected as a 2013 UNC GEAB Impact Award recipient

Spring 2013: Issue #14

  • PAHs and Deepwater Horizon Oil Spill
  • Advances in science allow more accurate assessment of exposure risks
  • Chemical once used in degreasing, dry cleaning classified as carcinogenic
  • Improving understanding of community knowledge and concerns at newly designated NPL sites in North Carolina
  • Journalists and science writers share expertise with SRPs from across the country
  • Fall 2012 Conference Presentations
  • Technology Development Boot Camp
  • Julia Rager, PhD receives the Syngenta Fellowship Award at 2013 SOT Meeting

Fall 2012: Issue #13

  • Determining how mother’s exposure to toxins during pregnancy impacts baby’s health
  • Biostatistics Core brings advanced analysis to SRP projects
  • UNC Researchers present to EPA CompTox Program
  • Student’s public health practicum project aims to improve human health assessment
  • Sanders presents to General Assembly
  • Introducing teachers to emerging science
  • UNC SRP presents cutting-edge research to ATSDR
  • New Multimedia Resources page showcases SRP videos

Summer 2012: Issue #12 (pdf)

  • NC State Scientist Teams Up with UNC to Improve Measurements of Chemicals in the Environment
  • Using a Mouse Population to Understand Effects of TCE in Humans
  • Chemistry Core Provides Cutting-edge Support for SRP Projects
  • Research Translation Core Builds SRP Trainees’ Skills and Knowledge
  • Save the Date! Connecting Research and Practice: A Dialogue between ATSDR and the NIEHS Superfund Research Program

Winter 2012: Issue #11 (pdf)

  • SRP Researchers Collaborate with UNC Cancer Center to Better Understand DNA Demethylation and Its Implications for Cancer and Stem Cell Research
  • Optimizing Bioremediation of Contaminated Soil
  • Passion for Children’s Health Fuels Research on Prenatal Exposure to Toxic Metals
  • Helping N.C. DHHS Map Contaminants
  • Teaching Environmental Justice

Fall 2010: Issue #10 (pdf)

  • UNC SRP Scientists Uncover Soil Microbes that Consume Contaminants and Speed Up Degradation
  • Cutting-edge Environmental Toxicity Research Lab Improves Understanding of Chemicals that Affect Health
  • RTC Project Tracking NC Private Well Contamination Celebrates Successes and Looks Ahead
  • Learn How to Turn Your Research into a Business with UNC OTD

Fall 2009: Issue #9 (pdf)

  • Study provides valuable new insight into links between formaldehyde exposure and cancer
  • Artificial skin expands opportunities to study chemical exposure
  • New models predict underground movement of contaminants with greater precision
  • SRP researchers recognized for their work
  • SRP awarded three supplemental grants
  • Helping government agencies use Superfund science
  • Teaching N.C. educators about water quality
  • Video opens Neuse RiverKeeper Foundation meeting

Fall 2008: Issue #8 (pdf)

  • Team finds new ways to keep NAPLs at bay
  • Speeding bioremediation by stimulating bacteria to eat more chemicals
  • Understanding how attacked DNA can mutate, cause human disease
  • New techniques measure chemicals that get under your skin
  • Seminars at DENR open communication, lead to new collaborations
  • Conference focuses on potential of bioavailability
  • The video medium spreads the message
  • Programs for teachers help link environment , health

Summer 2007: Issue # 7 (pdf)

  • When hazardous chemicals meet skin
  • Polycyclic aromatic hydrocarbons (PAHs)
  • Model PAH exposures
  • TCE metabolism
  • DNA damage and disease
  • From discovery to market
  • DENR partnership
  • Educating the community about Superfund

Winter/Spring 2006: Issue #6 (pdf)

  • ‘Integrated research’ emphasized in new UNC-Chapel Hill SBRP
  • What are Polycyclic Aromatic Hydrocarbons?
  • What are Chlorinated Hydrocarbons?
  • Exploring the impact of genetics on the body’s reaction to toxins
  • Determining microorganisms’ propensities for degrading PAHs
  • Technical assistance to communities
  • Taking the SBRP’s work from the lab into the real world
  • Water quality workshop held in Bertie County

Spring 2005: Issue #5 (pdf)

  • UNC-Chapel Hill SBRP Celebrates Progress, Plans for Future
  • From New York to China: UNC Scientist Studies Impact of Exposure to Two Airborne Toxins
  • Taking Promising Remediation Technology from the Lab to the Field
  • Finding Better Ways to Measure DNA Damage Caused by Chemicals
  • Eastern NC Teachers Learn about Water Quality Issues
  • SBRP Helps Educate about Dangers of Unexploded Ordnance
  • In Memoriam: Dr. Frances Lynn and Dr. Ramiah Sangaiah

Spring 2004: Issue #4 (pdf)

  • ‘Cross-Training’ Builds Essential Skills for Superfund Scientists
  • Measuring the Effects of Skin Exposure to Jet Fuel
  • Finding Ways to Clean Up Hard-to-Corral Contaminants
  • Estimating Arsenic Levels in New England’s Groundwater
  • SBRP Researchers Share their Work with State Agency
  • Online Teacher Training Workshop Makes a Splash
  • SBRP Offers Assistance to NC Communities

Winter 2003: Issue #3 (pdf)

  • A Natural Approach to Hazardous Waste Cleanup
  • Measuring New Yorkers’ Exposure to Air Pollutants Post 9-11
  • A Holistic Approach to Estimating Contamination And Health Risks
  • Chemistry at the Heart of Superfund Research
  • Outreach Core Partners with Environmental Groups to Address Electronics Waste
  • Outreach Core Supports Under-Resourced Schools in NC

Spring 2002: Issue #2 (pdf)

  • A Guide to Assisting Citizens with Technical Issues at Superfund Sites
  • North Carolina Case Studies
  • Lessons Learned: Communicating Technical Information to Citizens
  • Technical Assistance Programs
  • Lessons Learned: Working Effectively with Technical Advisors
  • What’s in the Water? Workshop for Teachers Draws on UNC-Chapel Hill Hazardous Waste Research

Spring 2001: Issue #1 (pdf)

  • Superfund 101: Mitigating the Impact of Hazardous Chemicals
  • Measuring the Effect of Skin Exposure to Hazardous Waste
  • Understanding How Hazardous Chemicals Trigger Health Effects
  • Improving Cleanup Technology for Contaminated Groundwater
  • Community Outreach: Helping Citizens Address Concerns about Local Contamination

Peer-reviewed Publications & Conference Proceedings

2013 | 2012 | 2011 | 2010 | 2009 | 2008 | 20072006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000

2013

Ahir BK,Sanders AP, Rager JE, Fry RC. Systems biology and birth defects prevention: blockade of the glucocorticoid receptor prevents arsenic-induced birth defects. Environ Health Perspect. 2013 Mar;121(3):332-8.PubMed PMID: 23458687;PubMed Central PMCID: PMC3616967.

Dunlevy SR, Singleton DR, Aitken MD. Biostimulation Reveals Functional Redundancy of Anthracene-Degrading Bacteria in Polycyclic Aromatic Hydrocarbon-Contaminated Soil. Environ Eng Sci. 2013 Nov;30(11):697-705.PubMed PMID: 24302851;PubMed Central PMCID: PMC3833303.

Edrissi B, Taghizadeh K, Moeller BC,Kracko D, Doyle-Eisele M, Swenberg JA, Dedon PC. Dosimetry of N⁶-formyllysine adducts following [¹³C²H₂]-formaldehyde exposures in rats. Chem Res Toxicol. 2013 Oct 21;26(10):1421-3.PubMed PMID: 24087891;PubMed Central PMCID: PMC3805309.

Gutierrez T, Berry D, Yang T, Mishamandani S, McKay L, Teske A, Aitken MD. Role of Bacterial Exopolysaccharides (EPS) in the Fate of the Oil Released during the Deepwater Horizon Oil Spill. PLoS One. 2013;8(6):e67717.PubMed PMID: 23826336; PubMed Central PMCID: PMC3694863.

Gutierrez T, Green DH, Nichols PD, Whitman WB, Semple KT, and Aitken MD. Polycyclovorans algicola gen. nov., sp. nov., an aromatic-hydrocarbon-degrading marine bacterium found associated with laboratory cultures of marine phytoplankton. Appl. Environ. Microbiol. 2013, 79:205-214. PMID: 23087039. PMCID: PMC3536080.

Gutierrez T, Singleton DR, Berry D, Yang T, Aitken MD, Teske A. Hydrocarbon-degrading bacteria enriched by the Deepwater Horizon oil spill identified by cultivation and DNA-SIP. ISME J. 2013 Nov;7(11):2091-104.PubMed PMID: 23788333;PubMed Central PMCID:PMC3806270.

Hira A,Yabe H,Yoshida K, Okuno Y,Shiraishi Y, Chiba K, Tanaka H, Miyano S, Nakamura J,Kojima S, Ogawa S, Matsuo K, Takata M, Yabe M. Variant ALDH2 is associated with accelerated progression of bone marrow failure in Japanese Fanconi anemia patients. Blood. 2013 Oct 31;122(18):3206-9.PubMed PMID: 24037726;PubMed Central PMCID: PMC3953058.

Kushman ME, Kraft AD, Guyton KZ, Chiu WA, Makris SL, Rusyn I. A systematic approach for identifying and presenting mechanistic evidence in human health assessments. Regul Toxicol Pharmacol. 2013 Nov;67(2):266-77.PubMed PMID: 23959061;PubMed Central PMCID: PMC3818152.

LePrevost CE, Gray KM, Hernández-Pelletier M, Bouma BD, Arellano C, Cope WG. Need for improved risk communication of fish consumption advisories to protect maternal and child health: influence of primary informants. Int J Environ Res Public Health. 2013 Apr 29;10(5):1720-34.PubMed PMID: 23629591;PubMed Central PMCID: PMC3709344.

Low Y,Sedykh A, Fourches D, Golbraikh A, Whelan M, Rusyn I, Tropsha A. Integrative chemical-biological read-across approach for chemical hazard classification. Chem Res Toxicol. 2013 Aug 19;26(8):1199-208.PubMed PMID: 23848138; PubMed Central PMCID:PMC3818153.

Moeller BC, Recio L, Green A, Sun W, Wright FA, Bodnar WM, Swenberg JA. Biomarkers of Exposure and Effect in Human Lymphoblastoid TK6 Cells Following [13C2]-Acetaldehyde Exposure. Toxicol Sci. Epub 2013 Feb 19. PMID: 23425604. PMC Journal – In Process.

Pachkowski B, Nakamura J. A neutral glyoxal gel electrophoresis method for the detection and semi-quantitation of DNA singlestrand breaks. Methods Mol Biol. 2013;1054:133-43.PubMed PMID: 23913289.

Pogribny, I.P., and Rusyn, I. Environmental toxicants, epigenetics, and cancer. Adv Exp Med Biol 754:215-32, 2013. (No PMCID available yet). PT=Review

Pogribny IP, Rusyn I. Role of epigenetic aberrations in the development and progression of human hepatocellular carcinoma. Cancer Lett. 2014 Jan 28;342(2):223-30.PubMed PMID: 22306342; PubMed Central PMCID: PMC3971756.

Prasad RY, Chastain PD, Nikolaishvili-Feinberg N,Smeester L, Kaufmann WK, Fry RC. Titanium dioxide nanoparticles activate the ATM-Chk2 DNA damage response in human dermal fibroblasts. Nanotoxicology. 2013 Sep;7(6):1111-9.PubMed PMID: 22770119; PubMed Central PMCID: PMC3867138.

Rager JE, Moeller BC, Doyle-Eisele M, Kracko D, Swenberg JA, Fry RC. Formaldehyde and Epigenetic Alterations: MicroRNA Changes in the Nasal Epithelium of Nonhuman Primates. Environmental Health Perspectives. 2013 Mar;121(3):339-44. doi: 10.1289/ehp.1205582. Epub 2013 Jan 15. (No PMCID available yet).

Rager JE, Moeller BC, Miller SK,Kracko D, Doyle-Eisele M,Swenberg JA, Fry RC. Formaldehyde-associated changes in microRNAs: tissue and temporal specificity in the rat nose, white blood cells, and bone marrow. Toxicol Sci. 2014 Mar;138(1):36-46. PubMed PMID: 24304932; PubMed Central PMCID: PMC3930361.

Reif DM,Sypa M, Lock EF, Wright FA, Wilson A, Cathey T, Judson RR, Rusyn I. ToxPi GUI: an interactive visualization tool for transparent integration of data from diverse sources of evidence. Bioinformatics. 2013 Feb 1;29(3):402-3.PubMed PMID: 23202747;PubMed Central PMCID: PMC3988461.

Rusyn I, Chiu WA, Lash LH,Kromhout H, Hansen J, Guyton KZ. Trichloroethylene: Mechanistic, epidemiologic and other supporting evidence of carcinogenic hazard. Pharmacol Ther. 2014 Jan;141(1):55-68.PubMed PMID: 23973663; PubMed Central PMCID: PMC3867557.

Sanders AP,Smeester L, Rojas D, DeBussycher T, Wu MC, Wright FA, Zhou YH, Laine JE, Rager JE,Swamy GK,Ashley-Koch A, Lynn Miranda M, Fry RC. Cadmium exposure and the epigenome: Exposure-associated patterns of DNA methylation in leukocytes from mother-baby pairs.Epigenetics. 2014 Feb 1;9(2):212-21. PubMed PMID: 24169490; PubMed Central PMCID: PMC3962531.

Soldatow, V.Y., LeCluyse, E.L., Griffith, L.G., and Rusyn, I. In vitro models for liver toxicity testing. Toxicol Res 2:23-39, 2013. doi: 10.1039/c2tx20051a.  PMCID: PMC3593300.

Starr TB and Swenberg JA. A novel bottom-up approach to bounding low-dose human cancer risks from chemical exposures. Regul Toxicol Pharmacol. 2013 Jan 23;65(3):311-315. doi: 10.1016/j.yrtph.2013.01.004 (No PCMID available yet).

Swenberg JA, Moeller BC, Lu K, Rager JE, Fry RC, Starr TB. Formaldehyde carcinogenicity research: 30 years and counting for mode of action, epidemiology, and cancer risk assessment. Toxicol Pathol. 2013 Feb;41(2):181-9.PubMed PMID: 23160431; PubMed Central PMCID: PMC3893912.

Uehara T,Kosyk O, Jeannot E,Bradford BU, Tech K, Macdonald JM, Boorman GA, Chatterjee S, Mason RP, Melnyk SB, Tryndyak VP, Pogribny IP, Rusyn I. Acetaminophen-induced acute liver injury in HCV transgenic mice. Toxicol Appl Pharmacol. 2013 Jan 15;266(2):224-32.PubMed PMID: 23200774; PubMed Central PMCID: PMC3534780.

Zeise, L., Bois, F.Y., Chiu, W.A., Hattis, D., Rusyn, I. and Guyton, K.Z. Addressing human variability in next-generation human health risk assessments of environmental chemicals. Environ Health Persp 121:23-31, 2013. PMCID: PMC3553440.

Zhou YH,Barry WT, Wright FA. Empirical pathway analysis, without permutation. Biostatistics. 2013 Jul;14(3):573-85.PubMed PMID: 23428933; PubMed Central PMCID: PMC3677738.

2012

Ahir B., Sanders AP, Rager JE, Fry RC. Systems Biology and Birth Defects Prevention: Blockade of the Glucocorticoid Receptor Prevents Arsenic-Induced Birth Defects. Environ Health Perspect, 2013 Mar;121(3):332-8. doi: 10.1289/ehp.1205659. Epub 2012 Dec 21. (No PMCID available yet).

Campbell, J.L., Clewell, R.A., Gentry, P.R., Andersen, M.E., Clewell, H.J. Physiologically based pharmacokinetic/toxicokinetic modeling. Methods Mol Biol 929:439-499, 2012. PMID: 23007440. (No PMCID available yet).

Guha, N., Loomis, D., Grosse, Y., Lauby-Secretan, B., El Ghissassi, F., Bouvard, V., Benbrahim-Tallaa, L., Baan, R., Mattock, H., Straif, K.; International Agency for Research on Cancer Monograph Working Group. Carcinogenicity of trichloroethylene, tetrachloroethylene, some other chlorinated solvents, and their metabolites. Lancet Oncol 13:1192-1193, 2012. (No PMCID available yet).

Gutierrez, T., P.D. Nichols, W.B. Whitman, and M.D. Aitken. Porticoccus hydrocarbonoclasticus sp. nov., an aromatic hydrocarbon-degrading bacterium identified in laboratory cultures of marine phytoplankton. Appl. Environ. Microbiol. 2012,78:628-637. PMCID: PMC3264135.

Hu J, Nakamura J, Richardson SD, Aitken MD. Evaluating the effects of bioremediation on genotoxicity of polycyclic aromatic hydrocarbon-contaminated soil using genetically engineered, higher eukaryotic cell lines. Environ Sci Technol. 2012 Apr 17;46(8):4607-13. PMID: 22443351, PMCID: PMC3348858.

Hu, J, Nakamura J, Richardson SD, Aitken MD. Evaluating the Effects of Bioremediation on Genotoxicity of Polycyclic Aromatic Hydrocarbon-Contaminated Soil Using Genetically Engineered DT40 Cell Lines, Environ. Sci. Technol. 2012, 46:4607-4613. PMCID: PMC3348858.

Koturbash, I., Melnyk, S., Montgomery, B., Shymonyak, S., Collins, L., Rusyn, I., Beland, F. and Pogribny, I. Inter-strain differences in oxidative stress induced by a lipotrope methyl-deficient diet in mice. Society of Toxicology Annual Meeting, San Francisco, CA. 2012.

Lock, E.F., Abdo, N. Huang, R., Xia, M., Kosyk, O., O’Shea, S.H., Zhou, Y.H., Sedykh, A., Tropsha, A., Austin, C.P., Tice, R.R., Wright, F.A., and Rusyn, I. Quantitative high-throughput screening for chemical toxicity in a population-based in vitro model. Toxicol Sci 126:578-588, 2012. PMCID: PMC3307611.

Lu K, Craft S, Nakamura J, Moeller BC, Swenberg JA. Use of LC-MS/MS and stable isotopes to differentiate hydroxymethyl and methyl DNA adducts from formaldehyde and nitrosodimethylamine. Chem Res Toxicol. Epub 2012 Jan 9. NIHMSID: NIHMS344734.

Luke AM, Nakamura J. O-hydroxylamine-coupled alkaline gel electrophoresis assay for the detection and measurement of DNA single-strand breaks. Methods Mol Biol. 2012; 920:307-13. PMID: 22941612 (No PMCID available yet).

Messier KP, Akita Y, Serre ML. Integrating Address Geocoding, Land Use Regression, and Spatiotemporal Geostatistical Estimation for Groundwater Tetrachloroethylene. Environmental Science & Technology (DOI: 10.1021/es203152a) Epub 2012 Jan 19.

Mutlu E, Jeong YC, Collins LB, Ham AJ, Upton PB, Hatch G, Winsett D, Evansky, P, Swenberg JA. A new LC-MS/MS method for the detection and quantification of endogenous and vinyl chloride induced 7-(2-oxoethyl)guanine in Sprague Dawley male rats. Chem Res Toxicol. Epub 2012 Jan 2. NIHMSID: NIHMS347940.

Nakamura, J., Gul, H., Tian, X., Bultman, S. and Swenberg, JA. Detection of PIGO-deficient cells using proaerolysin: a valuable tool to investigate mechanisms of mutagenesis in the DT40 cell system. PLoS One, 2012. PMCID:PMC3299801.

Pogribny, I.P., Rusyn, I. Role of epigenetic aberrations in the development and progression of human hepatocellular carcinoma. Cancer Lett. Epub 2012 Feb 2. PMID: 22306342 (No PMCID available yet).

Reif, D.M., Sypa, M., Lock, E.F., Wright, F.A., Wilson, A., Cathey, T., Judson, R.R., and Rusyn, I. ToxPi GUI: An interactive visualization tool for transparent integration of data from diverse sources of evidence. Bioinformatics. 2013 Feb 1;29(3):402-3. doi: 10.1093/bioinformatics/bts686. Epub 2012 Feb 29. PMID: 23202747 (No PMCID available yet).

Richardson, S.D., M.D. Jones, D.R. Singleton, and M.D. Aitken. Long-Term Simulation of In Situ Biostimulation of Polycyclic Aromatic Hydrocarbon-Contaminated Soil. Biodegradation, 3(4):621-33. (DOI: 10.1007/s10532-012-9538-9) 3(4): 621-33. 2012 July.

Sanders AP, Messier KP, Shehee M, Rudo K, Serre ML, Fry R. Arsenic in North Carolina: Public Health Implications. Environmental International. (DOI: 10.1016/j.envint.2011.08.005) 38(1): 10-16. 2012 Jan. NIHMSID: NIHMS320000.

Sanders, A.P., Flood, K., Chiang, S., Herring, A.H.,Wolf, L., and Fry, R.C. Towards prenatal biomonitoring in North Carolina: Assessing arsenic, cadmium, mercury, and lead levels in pregnant women. PLOS ONE. 2012, 7(3):e31354. PMCID: PMC3302877.

Singleton, D.R., J. Hu and M.D. Aitken. Heterologous Expression of Polycyclic Aromatic Hydrocarbon Ring-Hydroxylating Dioxygenase Genes from a Novel Pyrene-Degrading Betaproteobacterium, Appl. Environ. Microbiol.2012, 78:3552-3559. PMCID: PMC3346350.

Singleton, D.R., M.D. Jones, S.D. Richardson and M.D. Aitken. Pyrosequence Analyses of Bacterial Communities During Simulated in situ Bioremediation of Polycyclic Aromatic Hydrocarbon-Contaminated Soil, Appl. Microbiol. Biotechnol. Epub 2012 Nov 7. PMCID: PMC3600395.

Swenberg JA, Moeller BC, Lu K, Rager JE, Fry RC, Starr TB. Formaldehyde Carcinogenicity Research: 30 Years and Counting for Mode of Action, Epidemiology, and Cancer Risk Assessment. Toxicol Pathol. 2013;41(2):181-9. doi: 10.1177/0192623312466459. EPub 2012 Nov 16. PMID: 23160431, PMCID: PMC3299801.

Uehara, T., Kutanzi, K., Koturbash, I., Pogribny, I. and Rusyn, I. Epigenetic alterations underlie the mechanism of N,N-diethynitrosamine and carbon tetrachloride carcinogenesis in the mouse liver. Society of Toxicology Annual Meeting, San Francisco, CA. 2012.

Wright, F.A., Shabalin, A., and Rusyn, I. Computational tools for discovery and interpretation of expression quantitative trait loci. Pharmacogenomics. Accepted for publication in Vol. 13, 2012.

Yoo, H.S., Bradford, B.U., Collins, L.B., Kosyk, O., Shymonyak, S., Bodnar, W.M., Gold, A., Rusyn, I. Inter-strain Variability in Trichloroethylene (TCE) Metabolism: Role in Liver Toxicity. Society of Toxicology Annual Meeting, San Francisco, CA. 2012.

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2011

Birak, P.S., A.P. Newman, S.D. Richardson, S.C. Hauswirth, J.A. Pedit, M.D. Aitken, and C.T. Miller (2011) Cosolvent Flushing for the Remediation of PAHs from Former Manufactured Gas Plants, Journal of Contaminant Hydrology 126:72-84. PMCID: PMC32004444.

Bradford, B.U., Lock, E.F., Kosyk, O., Kim, S.K., Uehara, T., Harbourt, D., DeSimone, M., Threadgill, D.W., Tryndyak, V., Pogribny, I.P., Bleyle, L., Koop, D.R. and Rusyn, I. Inter-strain differences in the liver effects of trichloroethylene in a multi-strain panel of inbred mice. Toxicol Sci 120:206-217, 2011. PMCID: PMC3044200

Gatti, D.M., Lu, L., Williams, R.W., Sun, W., Wright, F.A., Threadgill, D.W., and Rusyn, I. MicroRNA expression in the livers of inbred mice. Mutat Res 714:126-133, 2011. PMCID: PMC3166582

Grosse, Y., Baan, R., Secretan-Lauby, B., El Ghissassi, F., Bouvard, V., Benbrahim-Tallaa, L., Guha, N., Islami, F., Galichet, L., Straif, K.; WHO International Agency for Research on Cancer Monograph Working Group. Carcinogenicity of chemicals in industrial and consumer products, food contaminants and flavourings, and water chlorination byproducts. Lancet Oncol 12:328-329, 2011.

Gutierrez, T, D.R. Singleton, M.D. Aitken, and K.T. Semple (2011) Stable-Isotope Probing of an Algal Bloom to Identify Uncultivated Members of the Rhodobacteraceae Associated with Low-Molecular-Weight Polycyclic Aromatic Hydrocarbon Degradation, Applied and Environmental Microbiology 77:7508-7516. PMCID: PMC3209190.

Ito S, Shen L, Dai Q, Wu SC, Collins LB, Swenberg JA, He C, Zhang Y. Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science. (2011) Sep 2;333(6047):1300-3. Epub 2011 Jul 21. NIHMSID: NIHMS352233

Hauswirth SC, Birak PS, Rylander SC, Miller C. Mobilization of Manufactured Gas Plant Tar with Alkaline Flushing Solutions. Environ Sci Technol. 2011 Nov 17. [Epub ahead of print] PubMed PMID: 22091957.

Jones, M.D., D.W. Crandell, D.R. Singleton, and M.D. Aitken (2011b) Stable-Isotope Probing of the Polycyclic Aromatic Hydrocarbon-Degrading Bacterial Guild in a Contaminated Soil, Environmental Microbiology, 13:2623-2632, DOI: 10.1111/j.1462-2920.2011.02501.x

Jones, M.D., D.R. Singleton, W. Sun, and M.D. Aitken (2011a) Multiple DNA Extractions Coupled to Stable-Isotope Probing of Anthracene-Degrading Bacteria in Contaminated Soil, Applied and Environmental Microbiology, 77:2984-2991. PMCID: PMC3126383.

Jung D, Matson CW, Collins LB, Laban G, Stapleton HM, Bickham JW, Swenberg JA, and Di Giulio RT. Genotoxicity in Atlantic killifish (Fundulus heteroclitus) from a PAH-contaminated Superfund site on the Elizabeth River, Virginia. Ecotoxicology. (2011). Nov;20(8):1890-9. PMCID: PMC3203518

Lu K, Gul H, Upton PB, Moeller BC, Swenberg JA. Formation of hydroxymethyl DNA adducts in rats orally exposed to stable isotope labeled methanol. Toxicol Sci. Epub 2011 Dec 8. PMID: 22157354.

Lu K, Moeller B, Doyle-Eisele M, McDonald J, Swenberg JA. Molecular dosimetry of N2-hydroxymethyl-dG DNA adducts in rats exposed to formaldehyde. Chem Res Toxicol. (2011). Feb 18;24(2):159-61. Epub 2010 Dec 14. PMCID: PMC3128468.

Moeller BC, Lu K, Doyle-Eisele M, McDonald J, Gigliotti A, Swenberg JA. Determination of N2-hydroxymethyl-dG adducts in the nasal epithelium and bone marrow of nonhuman primates following 13CD2-formaldehyde inhalation exposure. Chem Res Toxicol. (2011) Feb 18;24(2):162-4. Epub 2011 Jan 11. NIHMSID: NIHMS263973.

Money ES, Sackett DK, Aday DD, Serre ML. Using River Distance and Existing Hydrography Data Can Improve the Geostatistical Estimation of Fish Tissue Mercury at Unsampled Locations, Environmental Science & Technology. (DOI: 10.1021/es2003827) 45(18): 7746-7753. 2011 Sep 15

O’Neal, K., Shea, D. Monitoring Current-use Pesticide Exposure Using Passive Sampling Devices. Oral presentation at NIEHS Superfund Research Program Annual Meeting, Lexington, Kentucky; 24-25 October 2011.

Richardson, S.D., B. Lebron, C.T. Miller, and M.D. Aitken (2011) Recovery of Phenanthrene-Degrading Bacteria After Simulated in situ Persulfate Oxidation in Contaminated Soil, Environmental Science & Technology, 45:719-725

Richardson, S.D. and M.D. Aitken (2011b) Desorption and Bioavailability of Polycyclic Aromatic Hydrocarbons in Contaminated Soil Subjected to Long-Term in situ Biostimulation, Environmental Toxicology and Chemistry, 30: 2674-2681, DOI: 10.1002/etc.682. PMCID: PMC3215808

Ridpath JR, Takeda S, Swenberg JA, Nakamura J. Convenient, multi-well plate-based DNA damage response analysis using DT40 mutants is applicable to a high-throughput genotoxicity assay with characterization of modes of action. Environ Mol Mutagen.(2011). Mar;52(2):153-60. doi: 10.1002/em.20595. NIHMSID: NIHMS352229

Sanders AP, Messier KP, Shehee M, Rudo K, Serre ML, Fry R. Arsenic in North Carolina: Public Health Implications. Environmental International. (DOI: 10.1016/j.envint.2011.08.005) 38(1): 10-16. 2012 Jan. NIHMSID: NIHMS320000

Shea, D. Initial Assessment of PAH Bioavailability in the Deepwater Horizon Gulf of Mexico Oil Spill. Invited oral presentation at SETAC Focused Topic Meeting on Golf Oil Spill. Pensacola Beach, FL; 26-28 April 2011.

Singleton, D.R., S.D. Richardson, and M.D. Aitken (2011) Pyrosequence Analysis of Bacterial Communities in Bioreactors Treating Polycyclic Aromatic Hydrocarbon-Contaminated Soil, Biodegradation, 22:1061-1073, DOI:10.1007/s10532-011-9463-3. PMCID: PMC3227512.

Swenberg JA, Lu K, Moeller BC, Gao L, Upton PB, Nakamura J, Starr TB. Endogenous versus exogenous DNA adducts: their role in carcinogenesis,epidemiology, and risk assessment. Toxicol Sci.(2011). Mar;120Suppl 1:S130-45. Epub 2010 Dec 16. PMCID: PMC3043087.

Tan, Y.M., Clewell, H., Campbell, J., and Andersen, M. Evaluating pharmacokinetic and pharmacodynamic interactions with computational models in supporting cumulative risk assessment. Int J Environ Res Public Health. 8:1613-1630, 2011. PMCID: PMC3108131

Wright, F.A., Zhou, Y.H. Permutation-based pathway analysis, without permutation. Presented at the Joint Statistical Meetings, Miami FL, August 2011.

Wu KY, Chiang SY, Shih WC, Huang CC, Chen MF, Swenberg JA. The application of mass spectrometry in molecular dosimetry: Ethylene oxide as an example. Mass Spectrom Rev. doi: 10.1002/mas.20299. Epub 2011 Feb 16.

Zhang Z, Sangaiah R, Gold A, Ball LM. Synthesis of uniformly 13C-labeled polycyclic aromatic hydrocarbons. Org Biomol Chem. 2011 Aug 7;9(15):5431-5. Epub 2011 Jun 13. PMID: 21670806

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2010

Anderson, D.M., R.M. McLaughlin, and C.T. Miller (2010) A Sharp-Interface Interpretation of a Continuous Density Model for Homogenization of Gravity-Driven Flow in Porous Media, In press Physica D.

Asagoshi K, Tano K, Chastain PD 2nd, Adachi N, Sonoda E, Kikuchi K, Koyama H, Nagata K, Kaufman DG, Takeda S, Wilson SH, Watanabe M, Swenberg JA, Nakamura J. FEN1 functions in long patch base excision repair under conditions of oxidative stress in vertebrate cells. Mol Cancer Res. 2010 Feb;8(2):204-15. Epub 2010 Feb 9. PMCID: PMC2824787.

Birak, P.S., A.P. Newman, S.D. Richardson, S.C. Hauswirth, J.A. Pedit, M.D. Aitken, and C.T. Miller (2010) Cosolvent Flushing for the Remediation of PAH’s from Former Manufactured Gas Plants, In review.Boyer, T.H., C.T. Miller, and P.C. Singer (2010) Advances in Modeling Completely Mixed Flow Reactor for Ion Exchange, In press: American Society of Civil Engineers, Journal of Environmental Engineering.

Boysen G, Collins LB, Liao S, Luke AM, Pachkowski BF, Watters JL, Swenberg JA. Analysis of 8-oxo-7,8-dihydro-2′-deoxyguanosine by ultra high pressure liquid chromatography-heat assisted electrospray ionization-tandem mass spectrometry. J Chromatogr B Analyt Technol Biomed Life Sci. 2010 Feb 1;878(3-4):375-80. Epub 2009 Dec 6. PMID: 20022307.

Bu, S., J. Huang, T.H. Boyer, and C.T. Miller (2010) An Evaluation of Solution Algorithms and Numerical Approximation Methods for Modleing an Ion Exchange Process, In press: Journal of Computational Physics.

Johnson Wright, D., P.S. Birak, J.A. Pedit, and C.T. Miller (2010) Effectiveness of Source-Zone Remediation of DNAPL-Contaminated Subsurface Systems, In press: American Society of Civil Engineers, Journal of Environmental Engineering.

Johnson Wright, D., J.A. Pedit, S.E. Gasda, M.W. Farthing, L.L. Murphy, S.R. Knight, G.R. Brubaker, and C.T. Miller (2010) Dense, Viscous Brine Behavior in Heterogeneous Porous Medium Systems, In press: Journal of Contaminant Hydrology.

Lu K, Collins LB, Ru H, Bermudez E, Swenberg JA. Distribution of DNA adducts caused by inhaled formaldehyde is consistent with induction of nasal carcinoma but not leukemia. Toxicol Sci. 2010 Aug;116(2):441-51. Epub 2010 Feb 22. PMCID: PMC2905397.

Lu K, Ye W, Zhou L, Collins LB, Chen X, Gold A, Ball LM, Swenberg JA. Structural characterization of formaldehyde-induced cross-links between amino acids and deoxynucleosides and their oligomers. J Am Chem Soc. 2010 Mar 17;132(10):3388-99. PMCID: PMC2866014.

Mutlu E, Collins LB, Stout MD, Upton PB, Daye LR, Winsett D, Hatch G, Evansky P, Swenberg JA. Development and application of an LC-MS/MS method for the detection of the vinyl chloride-induced DNA adduct N(2),3-ethenoguanine in tissues of adult and weanling rats following exposure to [(13)C(2)]-VC. Chem Res Toxicol. 2010 Sep 20;23(9):1485-91. PMCID: PMC3104734.

Seyedabbasi, M.A., M.W. Farthing, P.T. Imhoff, and C.T. Miller (2010) Influence of Porous Medium Heterogeneity on NAPL Dissolution Fingering and Upscaled Mass Transfer, In review.

Zhang L, Freeman LE, Nakamura J, Hecht SS, Vandenberg JJ, Smith MT, Sonawane BR. Formaldehyde and leukemia: epidemiology, potential mechanisms, and implications for risk assessment. Environ Mol Mutagen. 2010 Apr;51(3):181-91. PMCID: PMC2839060.

Zhu, H. and M.D. Aitken (2010) Surfactant-Enhanced Desorption and Biodegradation of Polycyclic Aromatic Hydrocarbons in Contaminated Soil, Environmental Science & Technology 44:7260-7265.Zhu, H., D.R. Singleton, and M.D. Aitken (2010) Effects of Nonionic Surfactant Addition on Populations of Polycyclic Aromatic Hydrocarbon-Degrading Bacteria in Contaminated Soil, Environmental Science & Technology 44:7266-7271.

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2009

Allshouse W.B., J.D. Pleil, S. M. Rappaport, and M.L. Serre. Mass Fraction Spatiotemporal Geostatistics and its Application to Map Atmospheric Polycyclic Aromatic Hydrocarbons after 9/11, Stochastic Environmental Research & Risk Assessment, 23: 1213-1223 (2009).

Bailey GS, Reddy AP, Pereira CB, Harttig U, Baird W, Spitsbergen JM, Hendricks JD, Orner GA, Williams DE, Swenberg JA. Nonlinear cancer response at ultralow dose: a 40800-animal ED(001) tumor and biomarker study. Chem Res Toxicol. 2009 Jul;22(7):1264-76. PMCID: PMC2783240.

Birak, P.S., and C.T. Miller (2009) Dense Nonaqueous Phase Liquids at Former Manufactured Gas Plants: Challenges to Modeling and Remediation, Journal of Contaminant Hydrology, Vol. 105, No. 3-4, pp. 81-98.

Bradford, Blair U., S. Martinez, S. Ferguson, E. LecLuyse, and Ivan Rusyn. 2009. Development of the in vitro toxicogenetic model for hepatotoxicity. In: Society of Toxicology Annual Meeting. Baltimore, MD.

Bordeerat NK, Georgieva NI, Klapper DG, Collins LB, Cross TJ, Borchers CH, Swenberg JA, Boysen G. Accurate quantitation of standard peptides used for quantitative proteomics. Proteomics. 2009 Aug;9(15):3939-44. PMCID: PMC2766299.

Boysen G, Pachkowski BF, Nakamura J, Swenberg JA. The formation and biological significance of N7-guanine adducts. Mutation Research. 2009 Aug 2;678(2):76-94. Epub 2009 May 22. PMCID: PMC2739241.

Boysen G, Collins LB, Liao S, Luke AM, Pachkowski BF, Watters JL, Swenberg JA. Analysis of 8-oxo-7,8-dihydro-2′-deoxyguanosine by ultra high pressure liquid chromatography-heat assisted electrospray ionization-tandem mass spectrometry. J Chromatogr B Analyt Technol Biomed Life Sci. 2010 Feb 1;878(3-4):375-80. Epub 2009 Dec 6.

Cohen SM, Storer RD, Criswell KA, Doerrer NG, Dellarco VL, Pegg DG, Wojcinski ZW, Malarkey DE, Jacobs AC, Klaunig JE, Swenberg JA, Cook JC. Hemangiosarcoma in rodents: mode-of-action evaluation and human relevance. Toxicol Sci. 2009 Sep;111(1):4-18. Epub 2009 Jun 12.

Coulliette, A.D., E.S. Money, M.L. Serre, R.T. Noble (2009) Space/Time Analyses of Fecal Pollution and Rainfall in an eastern North Carolina Estuary, Environmental Science & Technology, Vol. 43(10), pp. 3728-3735.

Gatti, D.M., Harrill, A.H., Wright, F.A., Threadgill, D.W., and Rusyn, I. Replication and narrowing of gene expression quantitative trait loci using inbred mice. Mamm Genome 20:437-446, 2009.

Gatti, D.M., Sypa, M., Rusyn, I., Wright, F.A., and Barry, W.T. SAFEGUI: Resampling-based tests of categorical significance in gene expression data made easy. Bioinformatics 25:541-542, 2009.

Gatti, D.M., A.A. Shabalin, Tieu-Chong Lam, Fred A. Wright, Ivan Rusyn, and A.B. Nobel. 2009. FastMap: fast eQTL mapping in homozygous populations. Bioinformatics. (http://bioinformatics.oupjournals.org/) 25(4):482-9. doi:10.1093/bioinformatics/btn648 (http://dx.doi.org/10.1093/bioinformatics/btn6 48)

Gray, W.G., and C.T. Miller (2009) Thermodynamically Constrained Averaging Theory Approach for Modeling Flow and Transport Phenomena in Porous Medium Systems: 5. Single-Fluid-Phase Transport. Advances in Water Resources, Vol. 32, No. 5, pp. 681-711.

Gray, W.G., and C.T. Miller (2009) Thermodynamically Constrained Averaging Theory Approach for Modeling Flow and Transport Phenomena in Porous Medium Systems: 7. Single-Phase Megascale Flow Models, Advances in Water Resources, Vol. 32, No. 8, pp. 1121-1142.

Harrill, A.H., Ross, P.K., Threadgill, D.W., and Rusyn, I. Population-based discovery of toxicogenomics biomarkers for hepatotoxicity using a laboratory strain diversity panel. Toxicol Sci 110:235-243, 2009.

Harrill, A.H., Watkins, P.B., Su, S., Ross, P.K., Harbourt, D.E., Stylianou, I.M., Boorman, G.A., Russo, M.W., Sackler, R.S., Harris, S.C., Smith, P.C., Tennant, R., Bogue, M., Paigen, K., Harris, C., Contractor, T., Wiltshire, T., Rusyn, I., and Threadgill, D.W. Mouse population-guided resequencing reveals that variants in CD44 contribute to acetaminophen-induced liver injury in humans. Genome Res 19:1507-1515, 2009.

Hege, A., P.K. Ross, David W. Threadgill, and Ivan Rusyn. 2009. Phenotypic anchoring of gene expression data from acetaminophen hepatotoxicity studies in the mouse model of the human population reveals biomarkers of response. In: Society of Toxicology Annual Meeting. Baltimore, MD.

Il’yasova D, McCarthy BJ, Erdal S, Shimek J, Goldstein J, Doerge DR, Myers SR, Vineis P, Wishnok JS, Swenberg JA, Bigner DD, Davis FG. Human exposure to selected animal neurocarcinogens: a biomarker-based assessment and implications for brain tumor epidemiology. J Toxicol Environ Health B Crit Rev. 2009 Mar;12(3):175-87.

Jackson, A.B.S., C.T. Miller, and W.G. Gray (2009) Thermodynamically Constrained Averaging Theory Approach for Modeling Flow and Transport Phenomena in Porous Medium Systems: 6. Two-Fluid-Phase Flow, Advances in Water Resources, Vol. 32, No. 6, pp. 779-795.

Jarabek AM, Pottenger LH, Andrews LS, Casciano D, Embry MR, Kim JH, Preston RJ, Reddy MV, Schoeny R, Shuker D, Skare J, Swenberg J, Williams GM, Zeiger E. Creating context for the use of DNA adduct data in cancer risk assessment: I. Data organization. Crit Rev Toxicol. 2009;39(8):659-78.

Jung D, Cho Y, Collins LB, Swenberg JA, Di Giulio RT. Effects of benzo[a]pyrene on mitochondrial and nuclear DNA damage in Atlantic killifish (Fundulus heteroclitus) from a creosote-contaminated and reference site. Aquat Toxicol. 2009 Oct 19;95(1):44-51. Epub 2009 Aug 13. PMCID: PMC2776085.

Kim S, Collins LB, Boysen G, Swenberg JA, Gold A, Ball LM, Bradford BU, Rusyn I. Liquid chromatography electrospray ionization tandem mass spectrometry analysis method for simultaneous detection of trichloroacetic acid, dichloroacetic acid, S-(1,2-dichlorovinyl)glutathione and S-(1,2-dichlorovinyl)-L-cysteine. Toxicology. 2009 Aug 21;262(3):230-8. Epub 2009 Jun 21. PMCID: PMC2765814.

Kim, D. and Nylander-French, L.A.: Physiologically-Based Toxicokinetic Models and Their Application in Human Exposure and Internal Dose Assessment. In: Molecular, Clinical and Environmental Toxicology, Volume 1: Molecular Toxicology, Series: Experientia Supplementum Vol. 99, A. Luch (Ed.), Life Sciences, Birkhäuser, Basel (2009). p. 470. ISBN: 978-3-7643-8335-0.

Kim, S.K., Michelle C. DeSimone, David Harbourt, Gunnar Boysen, L. Collins, S. Waldyanatha, Blair U. Bradford, David W. Threadgill, and Ivan Rusyn. 2009. Analysis of trichloroethylene metabolism in a genetically diverse panel of mouse inbred strains. In: Society of Toxicology Annual Meeting. Baltimore, MD.

Kim, S., Kim, D., Pollack, G.M., Collins, L.B., and Rusyn, I. Pharmacokinetic analysis of trichloroethylene metabolism in male B6C3F1 mice: Formation and disposition of trichloroacetic acid, dichloroacetic acid, S-(1,2-dichlorovinyl)glutathione and S-(1,2-dichlorovinyl)-L-cysteine. Toxicol Appl Pharmacol 238:90-99, 2009.

Lan, Q., L. Zhang, M. Shen, W. J. Jo, R. Vermeulen, G. Li, C. Vulpe, S. Lim, X. Ren, S.M. Rappaport, S. Bernedt, M. Yeager, J. Yuenger, R.B. Hayes, M. Linet, S. Yin, S. Chanock, M.T. Smith, and N. Rothman, Large-scale Evaluation of Candidate Genes Identifies Associations between DNA Repair and Genomic Maintenance and Development of Benzene Hematotoxicity, Carcinogenesis, 30(1):50-58 (2009).

Lee, S.J, K. Yeatts, M.L. Serre (2009) Mapping childhood asthma prevalence across North Carolina using data collected at different spatial observation scales, Health and Place, Spatial and Spatio-Temporal Epidemiology, Vol. 1, pp. 49-60.

Lu, Kun, Wenjie Ye, Avram Gold, Louise M. Ball, and James A. Swenberg. 2009. The formation of S-[1-(N^-deoxyguanosinyl)methyl]-glutathione between glutathione and DNA during the detoxification of formaldehyde. Journal of Hydrologic Engineering. 131(10):34143415. doi:10.1021/ja808048c (http://dx.doi.org/10.1021/ja808048c)

McHale, C., L. Zhang, Q. Lan, G. Li, A. E. Hubbard, M. S. Forrest, R. Vermeulen, J. Chen, M. Shen, S.M. Rappaport, S. Yin, M. T. Smith, N. Rothman, Changes in the Peripheral Blood Transcriptome Associated with Occupational Benzene Exposure Identified by Cross-Comparison on Two Microarray Platforms, Genomics, 93(4):343-349 (2009).

Money, E., G. Carter, M.L. Serre (2009) Modern Space/Time Geostatistics using River Distances: Data Integration of Turbidity and E.coli Measurements to Assess Fecal Contamination Along the Raritan River in New Jersey, Environmental Science & Technology, Vol. 43, No. 10, pp. 3736-3742.

Money, E., G. Carter, M.L. Serre (2009) Using River Distances in the Space/Time Estimation of Dissolved Oxygen along Two Impaired River Networks in New Jersey, Water Research, Vol. 43, No. 7, pp. 1948-1958, doi:10.1016/j.watres.2009.01.034.

Nylander-French, L.A.: Effects of Dermal Exposure to Jet Fuel. In: Toxicology of the Skin: Target Organ Series. N. Monteiro-Riviere (Ed.), Informa Healthcare, New York, NY (submitted January 2009).

Onyemauwa, F., S.M. Rappaport, J. R. Sobus, D. Gajdošová, R. Wu, and Suramya Waidyanatha, Using Liquid Chromatography-Tandem Mass Spectrometry to Quantitate Monohydroxylated Metabolites of Polycyclic Aromatic Hydrocarbons in Urine, J Chromatog B, 877(11-12):1117-1125 (2009).

Pachkowski BF, Tano K, Afonin V, Elder RH, Takeda S, Watanabe M, Swenberg JA, Nakamura J. Cells deficient in PARP-1 show an accelerated accumulation of DNA single strand breaks, but not AP sites, over the PARP-1-proficient cells exposed to MMS. Mutat Res. 2009 Dec 1;671(1-2):93-9. Epub 2009 Sep 22. PMCID: PMC2784157.

Pogribny, I.P., Tryndyak, V.P., Bagnyukova, T.V., Melnyk, S., Montgomery, B., Ross, S.A., Latendresse, J.R., Rusyn, I., and Beland, F.A. Hepatic epigenetic phenotype predetermines individual susceptibility to hepatic steatosis in mice fed a lipogenic methyl-deficient diet. J Hepatol 51:176-186, 2009.

Rappaport S. M., S. Kim, Q. Lan, R. Vermeulen, S. Waidyanatha, L. Zhang, G. Li, S. Yin, R. B. Hayes, M. T. Smith, and N. Rothman, Evidence that Humans Metabolize Benzene via Two Pathways, Environ Health Perspect, 117(6):946-952 (2009).

Romanov, S., D. Gatti, M. Tsuchlya, M. Zeng, A. Medvedev, and Ivan Rusyn. 2009. Profiling of multiple transcription factors activity in mouse liver. In: Society of Toxicology Annual Meeting. Baltimore, MD.

Ross, P.K., Courtney G. Woods, Blair U. Bradford, Oksana Kosyk, D.M. Gatti, Michael L. Cunningham, and Ivan Rusyn. 2009. Time-course comparison of xenobiotic activators of CAR and PPARalpha in mouse liver. Toxicology and Applied Pharmacology. (http://www.academicpress.com/tap) 235(1):199-207. doi:10.1016/j.taap.2008.12.011 (http://dx.doi.org/10.1016/j.taap.2008.12.011)

Singleton, D.R., L. Guzmán Ramirez, and M.D. Aitken (2009) Characterization of a polycyclic aromatic hydrocarbon degradation gene cluster in a phenanthrene-degrading Acidovorax strain. Applied and Environmental Microbiology 75:2613-2620.

Swenberg, James A., T. Starr, Richard Albertini, and Vernon Walker. 2009. Response to Keshava et al. Chemical Research in Toxicology. (http://pubs.acs.org/journals/crtoec/index.htm l) 22(1):1012. doi:10.1021/tx800438g (http://dx.doi.org/10.1021/tx800438g)

Sobus, J.R., M.D. McClean, R.F. Herrick, S. Waidyanatha, L. Nylander-French, L.L. Kupper, and S.M. Rappaport, Comparing Urinary Biomarkers of Airborne and Dermal Exposure to Polycyclic Aromatic Compounds in Asphalt-Exposed Workers, Ann Occup Hyg, 53(6): 561-571 (2009).

Sobus, J.R. M.D. McClean, R.F. Herrick, S. Waidyanatha, F. Onyemauwa, L.L. Kupper, and S.M. Rappaport, Investigation of PAH Biomarkers in the Urine of Workers Exposed to Hot Asphalt, Ann Occup Hyg, 53(6): 551-560 (2009).

Sobus, J.R., S. Waidyanatha, M.D. McClean, R.F. Herrick, T.J. Smith, E. Garshick, F. Laden, J.E. Hart, Y. Zheng, and S.M. Rappaport, Urinary Naphthalene and Phenanthrene as Biomarkers of Occupational Exposure to Polycyclic Aromatic Hydrocarbons, Occup Environ Med, 66(2):99-104 (2009).

Watters JL, Satia JA, da Costa KA, Boysen G, Collins LB, Morrow JD, Milne GL, Swenberg JA. Comparison of three oxidative stress biomarkers in a sample of healthy adults. Biomarkers. 2009 Dec;14(8):587-95.

Ye W., Sangaiah R., Degen D.E., Gold A.., Jayaraj K., Koshlap K.M., Boysen G., Williams J., Tomer K.B., Mocanu V., Dicheva D., Parker C.E., Schaaper R.M. and Ball L.M.(2009). An Iminohydantoin Lesion Induced in DNA by Peracids and Other Epoxidizing Oxidants. J. Amer. Chem. Soc., in press, Web: April 8, 2009. DOI: 10.1021/ja8090752.

Zhao, N., D.M. Gatti, and Ivan Rusyn. 2009. Genome-level analysis of genetic regulation of sex-specific gene expression In mouse liver. In: Society of Toxicology Annual Meeting. Baltimore, MD.

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2008

Boyer, T.H., Cass T. Miller, and P.C. Singer. 2008. Modeling the Removal of Dissolved Organic Carbon by Anion Exchange in a Completely Mixed Flow Reactor with Resin Recycle and Partial Resin Regeneration. Water Research. (http://www.elsevier.com/inca/publications/sto re/3/0/9/index.htt) 42(8-9):1897-1906. doi:10.1016/j.watres.2007.11.018 (http://dx.doi.org/10.1016/j.watres.2007.11.01 8)

Chao, Yi-Chun E., Lawrence L. Kupper, and Leena A. Nylander-French. 2008. Relative importance of predictors in multiple linear regression analysis for scientific studies. Journal of Occupational and Enviornmental Hygiene. 5(8):519-529. doi:10.1080/15459620802225481 (http://dx.doi.org/10.1080/15459620802225481)

Chao, Yi-Chun E., Yue Zhao, Lawrence L. Kupper, and Leena A. Nylander-French. 2008. Quantifying the relative importance of predictors in multiple linear regression analyses for public health studies. Journal of Occupational and Enviornmental Hygiene. 5(8):519-529. doi:10.1080/15459620802225481 (http://dx.doi.org/10.1080/15459620802225481)

Fowler, Kathleen R., Jill P. Reese, Christopher E. Kees, J.E. Dennis, Carl T. Kelley, Cass T. Miller, C. Audet, A.J. Booker, G. Couture, Robert W. Darwin, Matthew W. Farthing, D.E. Finkel, J.M. Gablonsky, G. Gray, and T.G. Kolda. 2008. A Comparison of Derivative-Free Optimization Methods for Groundwater Supply and Hydraulic Capture Community Problems. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 31(5):743-757.

Gatti, D.M., A.A. Shabalin, Ivan Rusyn, Fred A. Wright, and A.B. Nobel. 2008. Fast association mapping using summation trees. In: 7th Annual Meeting of the Complex Traits Consortium,. Montreal,

Han, Jun, Ryan M. Danell, Jayanti R. Patel, Dmitry R. Gumerov, Cameron O. Scarlett, J Paul Speir, Carol Parker, Ivan Rusyn, Steven Zeisel, and Christoph H. Borchers. 2008. Towards high-throughput metabolomics using ultrahigh-field Fourier transform ion cyclotron resonance mass spectrometry. Metabolomics. (http://www.springerlink.com/content/1573-3890 /) 4(2):128-140. doi:10.1007/s11306-008-0104-8 (http://dx.doi.org/10.1007/s11306-008-0104-8)

Jeong, Yo-Chan, N.J. Walker, D.E. Burgin, G. Kissling, M. Gupta, Lawrence L. Kupper, Linda S. Birnbaum, and James A. Swenberg. 2008. Accumulation of M^G DNA adducts after chronic exposure to PCBs, but not from acute exposure to polychlorinated aromatic hydrocarbons. Free Radical Biology and Medicine. 45(5):585-91. doi:10.1016/j.freeradbiomed.2008.04.043 (http://dx.doi.org/10.1016/j.freeradbiomed.200 8.04.043)

Jones, Maiysha D., David Singleton, Darryl Carstensen, Sabrina N. Powell, Julie S. Swanson, Frederic K. Pfaender, and Michael D. Aitken. 2008. Effect of Incubation Conditions on the Enrichment of Pyrene-Degrading Bacteria Identified by Stable Isotope Probing in an Aged, PAH-Contaminated Soil. Microbial Ecology. (http://link.springer-ny.com/link/service/jour nals/00248/index.htm) 56(2):341-349.

Kang-Sickel, J.Connie, Tae-Gyu Nam, Karupiah Jayaraj, Louise M. Ball, John E. French, David G. Klapper, Avram Gold, and Leena A. Nylander-French. 2008. S-arylcysteine-keratin adducts as biomarkers of human dermal exposure to aromatic hydrocarbons. Chemical Research in Toxicology. (http://pubs.acs.org/journals/crtoec/index.htm l) 21(4):852-858.

Kim, David, Matthew W. Farthing, J. Lee, Cass T. Miller, and Leena A. Nylander-French. 2008. Mathematical Description of the Uptake of Hydrocarbons in Jet Fuel across the Stratum Corneum of Human Volunteers. Toxicology Letters. (http://www.sciencedirect.com/science/journal/ 03784274) 178(3):146-51. doi:10.1016/j.toxlet.2008.03.005 (http://dx.doi.org/10.1016/j.toxlet.2008.03.00 5)

Kim, S., L.B. Collins, Gary M. Pollack, and Ivan Rusyn. 2008. Pharmacokinetic modeling of trichloroethylene metabolism in B6C3F1 mice: Formation and disposition of trichloroacetic add, dichloroacetic add, S-(1,2-dichlorovinyl)glutathlone and S-(1,2-dichlorovlnyl)-L-cystelne. In: NIEHS Superfund Basic Research & Training Program 2008 Annual Meeting. Pacific Grove, CA.

Lu, Kun, Gunnar Boysen, Lina Gao, Leonard Collins, and James A. Swenberg. 2008. Formaldehyde-Induced histone modifications In vitro. Chemical Research in Toxicology. (http://pubs.acs.org/journals/crtoec/index.htm l) 21(8):15861593. doi:10.1021/tx8000576 (http://dx.doi.org/10.1021/tx8000576)

Miller, Cass T. and William G. Gray. 2008. Thermodynamically Constrained Averaging Theory Approach for Modeling Flow and Transport Phenomena in Porous Medium Systems: 4. Species Transport Fundamentals. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 31(3):577597. doi:10.1016/j.advwatres.2007.11.004 (http://dx.doi.org/10.1016/j.advwatres.2007.11 .004)

Park, J., Louise M. Ball, S.D. Richardson, H. Zhu, and Michael D. Aitken. 2008. Oxidative Mutagenicity of Polar Fractions from Polycyclic Aromatic Hydrocarbon-Contaminated Soils. Environmental Toxicology and Chemistry. (http://etc.allenpress.com/entconline/?request =index-html) (accepted for publication)

Pogribny, I.P., Ivan Rusyn, and Frederick A. Beland. 2008. Epigenetic aspects of genotoxic and non-genotoxic hepatoCarcinogenesis: studies in rodents. Environmental and Molecular Mutagenesis. (http://www3.interscience.wiley.com/cgi-bin/jt oc?ID=10009058) 49(1):9-15.

Pogribny, I.P., V.P. Tryndyak, A. Boureiko, Stepan Melnyk, T.V. Bagnyukova, B. Montgomery, and Ivan Rusyn. 2008. Mechanisms of peroxisome proliferator-induced DNA hypomethylation in rat liver. Mutation Research. (http://www.elsevier.com/wps/find/journaldescr iption.cws_home/522820/description#descriptio n) 644(1-2):17-23.

Powell, Sabrina N., David Singleton, and Michael D. Aitken. 2008. Effects of Enrichment with Salicylate on Bacterial Selection and PAH Mineralization in a Microbial Community from a Bioreactor Treating Contaminated Soil. Environmental Science and Technology. (http://pubs.acs.org/journals/esthag/) (accepted for publication)

Rusyn, Ivan and A.H. Harrill. 2008. Systems biology and functional genomics approaches for the identification of cellular responses to drug toxicity. Expert Opinion on Drug Metabolism & Toxicology. (http://www.informapharmascience.com/?cookieSe t=1) 4(11):1379-1389. doi:10.1517/17425255.4.11.1379 (http://dx.doi.org/10.1517/17425255.4.11.1379)

Singleton, David, S.D. Richardson, and Michael D. Aitken. 2008. Effects of Enrichment with Phthalate on Polycyclic Aromatic Hydrocarbon Biodegradation in Contaminated Soil. Biodegradation. (http://www.springerlink.com/content/1572-9729 /) 19(4):577-587.

Swenberg, James A., E. Fryar-Tita, Yo-Chan Jeong, Gunnar Boysen, T. Starr, Vernon Walker, and Richard Albertini. 2008. Biomarkers in toxicology and risk assessment: informing critical dose-response relationships. Chemical Research in Toxicology. (http://pubs.acs.org/journals/crtoec/index.htm l) 21(1):253-265.

Zhu, H., J. Chadwick Roper, Frederic K. Pfaender, and Michael D. Aitken. 2008. Effects of Anaerobic Incubation on the Desorption of Polycyclic Aromatic Hydrocarbons from Contaminated Soils. Environmental Toxicology and Chemistry. (http://etc.allenpress.com/entconline/?request =index-html) 27(4):837-844. doi:10.1897/07-166.1 (http://dx.doi.org/10.1897/07-166.1)

Zhu, Hao, Ivan Rusyn, Ann Richard, and Alexander Tropsha. 2008. Use of cell viability assay data improves the prediction accuracy of conventional quantitative structure-activity relationship models of animal carcinogenicity. Environmental Health Perspectives. 116(4):506-13. doi:10.1289/ehp.10573 (http://dx.doi.org/10.1289/ehp.10573)

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2007

Akita, Yasuyuki, Gail Carter, and Marc L. Serre. 2007. Spatiotemporal nonattainment assessment of surface water tetrachloroethylene in New Jersey. Journal of Environmental Quality. (http://jeq.scijournals.org/) 36(2):508-520.

Brusick, D., M.S. Small, E.L. Cavalieri, D. Chakravarti, X. Ding, D.G. Longfellow, Jun Nakamura, E.C. Rogan, and James A. Swenberg. 2007. Possible genotoxic modes of action for naphthalene. Regulatory Toxicology and Pharmacology.

Chao, Yi-Chun E., Lawrence L. Kupper, Berrin Serdar, Peter P. Egeghy, Stephen M. Rappaport, and Leena A. Nylander-French. 2007. Dermal exposure to jet fuel JP-8 significantly contributes to production of urinary naphthols in fuel-cell maintenance workers. Environmental Health Perspectives. 114(2):182-185.

Gray, William G. and Cass T. Miller. 2007. Consistent Thermodynamic Formulations for Multiscale Hydrologic Systems: Fluid Pressures. Water Resources Research. (http://www.agu.org/journals/wr/) 43:

Kim, D., M.E. Andersen, Yi-Chun E. Chao, Peter P. Egeghy, Stephen M. Rappaport, and Leena A. Nylander-French. 2007. Human Dermal and Inhalation Exposures to Jet Fuel Can Be Predicted Using a PBTK Model. Environmental Health Perspectives. 115(6):894-901. doi:10.1289/ehp.9778 (http://dx.doi.org/10.1289/ehp.9778)

Kim, David, Melvin E. Andersen, Yi-Chun E. Chao, Peter P. Egeghy, Stephen M. Rappaport, and Leena A. Nylander-French. 2007. PBTK modeling demonstrates contribution of dermal and inhalation exposure components to end-exhaled breath concentrations of naphthalene. Environmental Health Perspectives. 115:894-901.

Kim, David, Melvin E. Andersen, Yi-Chun E. Chao, Peter P. Egeghy, Stephen M. Rappaport, and Leena A. Nylander-French. 2007. Prediction of human dermal and inhalation exposures to jet fuel by analysis of a PBTK model. Environmental Health Perspectives. 115(6):894-901.

Kim, Sungkyoon, Qing Lan, Suramya Waidyanatha, Stephen Chanock, Brent A. Johnson, Roel Vermeulen, Martyn T. Smith, Luoping Zhang, Guilan Li, Min Shen, Songnian Yin, Nathaniel Rothman, and Stephen M. Rappaport. 2007. Genetic polymorphisms and benzene metabolism in humans exposed to a wide range of air concentrations. Pharmacogenetics And Genomics. 17(10):789-801.

Kupper, Lawrence L., James A. Swenberg, J.L. Waiters, J.A. Satia, and J.C. Schroeder. 2007. Associations of antioxidant nutrients and oxidative DNA damage in healthy African-American and White adults. Cancer Epidemiology Biomarkers & Prevention. (http://cebp.aacrjournals.org/) 16(7):1428-36.

Li, Huina, Matthew W. Farthing, and Cass T. Miller. 2007. Adaptive Local Discontinuous Galerkin Approximation to Richards’ Equation. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 30(9):1883-1901.

Li, Huina, Matthew W. Farthing, Clint N. Dawson, and Cass T. Miller. 2007. Local discontinuous galerkin approximations of Richards’ Equation. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 30(3):555-575.

Lin, Yu-Sheng, Roel Vermeulen, Chin H. Tsai, Suramya Waidyanatha, Qing Lan, Nathaniel Rothman, Martyn T. Smith, Luoping Zhang, Min Shen, Guilan Li, Songnian Yin, Sungkyoon Kim, and Stephen M. Rappaport. 2007. Albumin adducts of electrophilic benzene metabolites in benzene-exposed and control workers. Environmental Health Perspectives. 115(1):28-34.

McClure, James E., David Adalsteinsson, Chongxun Pan, William G. Gray, and Cass T. Miller. 2007. Approximation of interfacial properties in multiphase porous medium systems. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 30(3):354-365.

Miller, Cass T. and William G. Gray. 2007. Hydrogeological Research, Education, and Practice: A Path to Future Contributions, American Society of Civil Engineers. Journal of Hydrologic Engineering. 13(1):7-12.

Pan, Chongxun, Elisa Dalla, David Franzosi, and Cass T. Miller. 2007. Pore-scale simulation of entrapped non-aqueous phase liquid dissolution. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 30(3):623-640.

Ridpath, J.R., Jun Nakamura, Keizo Tano, A.M. Luke, Eiichiro Sonoda, Hirohumi Arakawa, Jean-Marie Buerstedde, D.A. Gillespie, J.E. Sale, M. Yamazoe, D.K. Bishop, M. Takata, Shunichi Takeda, Masami Watanabe, and James A. Swenberg. 2007. Cells deficient in the FANC/BRCA pathway are hypersensitive to plasma levels of formaldehyde. Cancer Research. (http://cancerres.aacrjournals.org/) 67(23):11117-22.

Rupert, C.P. and Cass T. Miller. 2007. An Analysis of Polynomial Chaos Approximations for Modeling Single-Fluid-Phase Flow in Porous Medium Systems. Journal of Computational Physics. 2226(2):2175-2205.

Singleton, David, Mark Hunt, Sabrina N. Powell, Roberto Frontera-Suau, and Michael D. Aitken. 2007. Stable-isotope probing with multiple growth substrates to determine substrate specificity of uncultivated bacteria. Journal of Microbiological Methods. (http://www.sciencedirect.com/science/journal/ 01677012) 69(1):180-7.

Tano, Keizo, Jun Nakamura, Kenjiro Asagoshi, Hirohumi Arakawa, Eiichiro Sonoda, Elena K. Braithwaite, Rajendra Prasad, Jean-Marie Buerstedde, Shunichi Takeda, Masami Watanabe, and Samuel H. Wilson. 2007. Interplay between DNA polymerases beta and lambda in repair of oxidation DNA damage in chicken DT40 cells. DNA Repair. 6(6):869-875.

Woods, Courtney G., Amanda M. Burns, Akira Maki, Blair U. Bradford, Michael L. Cunningham, Henry D. Connor, Maria B. Kadiiska, Ronald P. Mason, Jeffrey M. Peters, and Ivan Rusyn. 2007. Sustained formation of alpha-(4-pyridyl-1-oxide)-N-tert-butylnitrone radical adducts in mouse liver by peroxisome proliferators is dependent upon peroxisome proliferator-activated receptor-alpha, but not NADPH oxidase. Free Radical Biology and Medicine. 42(3):335-342.

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2006

Chao, Yi-Chun E., Lawrence L. Kupper, Berrin Serdar, Peter P. Egeghy, Stephen M. Rappaport, and Leena A. Nylander-French. 2006. Dermal exposure to jet fuel JP-8 significantly contributes to the production of urinary naphthols in fuel-cell maintenance workers. Environmental Health Perspectives. 114(2):182-185.

Chastain, Paul D., Jun Nakamura, James A. Swenberg, and David G. Kaufman. 2006. Nonrandom AP site distribution in highly proliferative cells. FASEB Journal. (http://www.fasebj.org/) 20(14):2612-4.

Christman, Russell F. and Frederic K. Pfaender. 2006. Molecular implications of hydrophobic organic partitioning theory. Acta Hydrochimica et Hydrobiologica. (http://www3.interscience.wiley.com/cgi-bin/jt oc?ID=5007772) 34(4):367-374.

DeSimone, Michelle C., David Harbourt, Gunnar Boysen, Leonard Collins, Blair U. Bradford, Jun Han, James A. Swenberg, David W. Threadgill, and Ivan Rusyn. 2006. Multi-strain study of trichoroethylene toxicity in mice. In: Superfund Research Program Annual Meeting, December 11-12 (http://www-apps.niehs.nih.gov/srp/3/Annual_2 006/) . La Jolla, CA.

Farthing, Matthew W., Christopher E. Kees, Eleanor W. Jenkins, and Cass T. Miller. 2006. An evaluation of linearly implicit time discretization methods for approximating Richards’ Equation. Chapter 218in: Proceedings of the 16th International Conference on Computational Methods in Water Resources (CMWR XVI), June 19-22 (http://www.cmwr-xvi.org/) . Copenhagen, Denmark.

Farthing, Matthew W., Christopher E. Kees, Thomas F. Russell, and Cass T. Miller. 2006. An ELLAM approximation for advective dispersive transport with nonlinear sorption. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 29(5):657-75.

Farthing, Matthew W., Christopher E. Kees, Thomas F. Russell, and Cass T. Miller. 2006. An ELLAM approximation for advective- dispersive transport with nonlinear equilibrium and nonequilibrium sorption. Chapter 226in: Proceedings of the 16th International Conference on Computational Methods in Water Resources (CMWR XVI), June 19-22 (http://www.cmwr-xvi.org/) . Copenhagen, Denmark.

Gray, William G. and Cass T. Miller. 2006. Thermodynamically constrained averaging theory approach for modeling flow and transport phenomena in porous medium systems: 3. Single-fluid-phase flow. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 29(11):1745-1765.

Han, Jun, David Harbourt, Ryan M. Danell, Christoph H. Borchers, and Ivan Rusyn. 2006. High throughput metabolite profiling of serum from trichloroethylene-exposed mice by direct infusion FTICR-MS. In: Superfund Research Program Annual Meeting, December 11-12 (http://www-apps.niehs.nih.gov/srp/3/Annual_2 006/) . La Jolla, CA.

Kang-Sickel, J.Connie, Avram Gold, Louise M. Ball, Jayaraj Karupiah, Leena A. Nylander-French, Vandy Parron, David G. Klapper, and John E. French. 2006. Detection of naphthalene keratin adducts in human skin using ELISA. Drug Metabolism Reviews. 38(Suppl.2):67-68.

Kim, David, M. Anderson, and Leena A. Nylander-French. 2006. A dermatotoxicokinetic model of human exposures to jet fuel. Toxicological Sciences. (http://www3.oup.co.uk/toxsci/) 93(1):22-33.

Kim, David, M. Anderson, and Leena A. Nylander-French. 2006. Dermal absorption and penetration of jet fuel components in humans. Toxicology Letters. (http://www.sciencedirect.com/science/journal/ 03784274) 165(1):11-21.

Kim, Sungkyoon, Roel Vermeulen, Suramya Waidyanatha, Brent A. Johnson, Qing Lan, Nathaniel Rothman, Martyn T. Smith, Luoping Zhang, Guilan Li, Min Shen, Songnian Yin, and Stephen M. Rappaport. 2006. Using urinary biomarkers to elucidate dose-related patterns of human benzene metabolism. Carcinogenesis. (http://carcin.oupjournals.org/) 27(4):772-81.

Kim, Sungkyoon, Roel Vermeulen, Suramya Waidyanatha, Brent A. Johnson, Qing Lan, Martyn T. Smith, Luoping Zhang, Guilan Li, Min Shen, Songnian Yin, Nathaniel Rothman, and Stephen M. Rappaport. 2006. Modeling human metabolism of benzene following occupational and environmental exposures. Cancer Epidemiology Biomarkers & Prevention. (http://cebp.aacrjournals.org/) 15(11):2246-52.

Lin, Yu-Sheng, Wendy McKelvey, Suramya Waidyanatha, and Stephen M. Rappaport. 2006. Variability of albumin adducts of 1,4- benzoquinone, a toxic metabolite of benzene, in human volunteers. Biomarkers. (http://tandf.catchword.com/titles/1354750x.ht m) 11(1):14-27.

McClure, James E., David Adalsteinsson, Dorthe Wildenschild, William G. Gray, and Cass T. Miller. 2006. Computation of interfacial areas, common curve lengths, and interfacial curvatures from experimentally derived data. Chapter 224in: Proceedings of the 16th International Conference on Computational Methods in Water Resources (CMWR XVI), June 19-22 (http://www.cmwr-xvi.org/) . Copenhagen, Denmark.

Mechanic, Leah M., Robert C. Millikan, Jon Player, Allan Rene de Cotret, Scott Winkel, Kendra Worley, Kristin Heard, Kimberley Heard, Chiu-Kit J. Tse, and Temitope Keku. 2006. Polymorphisms in nucleotide excision repair genes, smoking and breast cancer in African Americans and whites: a population-based casecontrol study. Carcinogenesis. (http://carcin.oupjournals.org/) 27(7):1377-1385.

Pachkowski, Brian F., Scott Winkel, Yoshiko Kubota, James A. Swenberg, Robert C. Millikan, and Jun Nakamura. 2006. XRCC1 genotype and breast cancer: Functional studies and epidemiologic data show interactions between XRCC1 codon 280 his and smoking. Cancer Research. (http://cancerres.aacrjournals.org/) 66(5):2860-2868.

Pan, Chongxun, Li-Shi Luo, and Cass T. Miller. 2006. An evaluation of lattice Boltzmann schemes for porous medium flow simulation. Computers & Fluids. (http://www.elsevier.com/wps/find/journaldescr iption.cws_home/365/description#description) 35(8-9):898-909.

Pan, Chongxun, James E. McClure, William G. Gray, and Cass T. Miller. 2006. Lattice boltzmann simulation of non-darcy flow. Chapter 248in: Proceedings of the 16th International Conference on Computational Methods in Water Resources (CMWR XVI), June 19-22 (http://www.cmwr-xvi.org/) . Copenhagen, Denmark.

Pleil, Joachim D., William E. Funk, and Stephen M. Rappaport. 2006. Residual indoor contamination from world trade center rubble fires as indicated by polycyclic aromatic hydrocarbon profiles. Environmental Science and Technology. (http://pubs.acs.org/journals/esthag/) 40(4):1172-1177.

Pravecek, Tasha L., Russell F. Christman, and Frederic K. Pfaender. 2006. Microbial bioavailability of pyrene in three laboratory-contaminated soils under aerobic and anaerobic conditions. Journal of Contaminant Hydrology. (http://www.sciencedirect.com/science/journal/ 01697722) 86:72-86.

Reese, Jill P., Kevin R. Long, Carl T. Kelley, William G. Gray, and Cass T. Miller. 2006. Simulating non-darcy flow through porous media using sundance. Chapter 148in: Proceedings of the 16th International Conference on Computational Methods in Water Resources (CMWR XVI), June 19-22 (http://www.cmwr-xvi.org/) . Copenhagen, Denmark.

Roper, J.Chadwick, Denise M. Brown, Michelle A. Sullivan, Robert Schoonhoven, James A. Swenberg, and Frederic K. Pfaender. 2006. Epifluorescence microscopy and image analysis of high-level polycyclic aromatic hydrocarbon contamination in soils. Environmental Toxicology and Chemistry. (http://etc.allenpress.com/entconline/?request =index-html) 25(12):3093-100.

Serdar, Berrin, Rogelio Tornero-Velez, Diana Echeverria, Leena A. Nylander-French, Lawrence L. Kupper, and Stephen M. Rappaport. 2006. Predictors of occupational exposure to styrene and styrene-7,8-oxide in the reinforced plastics industry. Occupational and Environmental Medicine. 63(10):707-12.

Shen, Min, Qing Lan, Luoping Zhang, Stephen Chanock, Guilan Li, Roel Vermeulen, Stephen M. Rappaport, Weihong Guo, Richard B. Hayes, Martha S. Linet, Songnian Yin, Meredith Yeager, Robert Welch, Matthew S. Forrest, Nathaniel Rothman, and Martyn T. Smith. 2006. Polymorphisms in genes involved in DNA double-strand break repair pathway and susceptibility to benzene-induced hematotoxicity. Carcinogenesis. (http://carcin.oupjournals.org/) 27(10):2083-9.

Singleton, David, Ramiah Sangaiah, Avram Gold, Louise M. Ball, and Michael D. Aitken. 2006. Identification and quantification of uncultivated Proteobacteria associated with pyrene degradation in a bioreactor treating PAH-contaminated soil. Environmental Microbiology. (http://www.blackwell-synergy.com/loi/emi) 8(10):1736-45.

Vermeulen, Roel, Qing Lan, Guilan Li, Stephen M. Rappaport, Sungkyoon Kim, Berna van Wendel de Joode, Min Shen, Xu Bohong, Martyn T. Smith, Luoping Zhang, Songnian Yin, and G. Rothman. 2006. Assessment of dermal exposure to benzene and toluene in shoe manufacturing by activated carbon cloth patches. Journal of Environmental Monitoring. (http://www.rsc.org/Publishing/Journals/em/ind ex.asp) 8(11):1143-8.

Ye, Wenjie, Ramiah Sangaiah, Diana E. Degen, Avram Gold, Karupiah Jayaraj, Karl M. Koshlap, Gunnar Boysen, Jason Williams, Kenneth B. Tomer, and Louise M. Ball. 2006. A 2-iminohydantoin from the oxidation of guanine. Chemical Research in Toxicology. (http://pubs.acs.org/journals/crtoec/index.htm l) 19(4):506-10.

Yokley, Karen, Hien T. Tran, Kaija Pekari, Stephen M. Rappaport, Vesa Riihimaki, Nathaniel Rothman, Suramya Waidyanatha, and Paul M. Schlosser. 2006. Physiologically-based pharmacokinetic modeling of benzene in humans: a Bayesian approach. Risk Analysis. (http://www.blackwellpublishing.com/journal.as p?ref=0272-4332) 26(4):925-43.

Yoshimura, Michio, Masaoki Kohzaki, Jun Nakamura, Kenjiro Asagoshi, Eiichiro Sonoda, Esther Hou, Rajendra Prasad, Samuel H. Wilson, Keizo Tano, Akira Yasui, Li Lan, Mineaki Seki, Richard D. Wood, Hirohumi Arakawa, Jean-Marie Buerstedde, Helfrid Hochegger, Takashi Okada, Masahiro Hiraoka, and Shunichi Takeda. 2006. Vertebrate POLQ and POLbeta cooperate in base excision repair of oxidative DNA damage. Molecular Cell. (http://www.molecule.org/) 24(1):115-25.

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2005

Canter, Jeffrey A., Asha R. Kallianpur, Fritz F. Parl, and Robert C. Millikan. 2005. Mitochondrial DNA G10398A Polymorphism and Invasive Breast Cancer in African-American Women. Cancer Research. (http://cancerres.aacrjournals.org/) 65(17):8028-8033.

Chao, Yi-Chun E., Roger L. Gibson, and Leena A. Nylander-French. 2005. Dermal Exposure to Jet Fuel (JP-8) in US Air Force Personnel. Annals of Occupational Hygiene. (http://www.sciencedirect.com/science/journal/ 00034878) 49(7):639-645.

Gray, William G. and Cass T. Miller. 2005. Thermodynamically constrained averaging theory approach for modeling flow and transport phenomena in porous medium systems: 1. Motivation and overview. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 28(2):161-180.

Henderson, Alistair P., Martine L. Barnes, Christine Bleasdale, Richard Cameron, William Clegg, Sarah L. Heath, Andrew B. Lindstrom, Stephen M. Rappaport, Suramya Waidyanatha, William P. Watson, and Bernard T. Golding. 2005. Reactions of benzene oxide with thiols including glutathione. Chemical Research in Toxicology. (http://pubs.acs.org/journals/crtoec/index.htm l) 18(2):265-270.

Jeong, Yo-Chan and James A. Swenberg. 2005. Formation of M1G-dR from endogenous and exogenous ROS-inducing chemicals. Free Radical Biology and Medicine. 39(8):1021-1029.

Jeong, Yo-Chan, Jun Nakamura, Patricia B. Upton, and James A. Swenberg. 2005. Pyrimido[1,2-a]-purin-10(3H)-one, M1G, is less prone to artifact than base oxidation. Nucleic Acids Research. (http://www3.oup.co.uk/nar/contents/) 33(19):6426-6434.

Jeong, Yo-Chan, Ramiah Sangaiah, Jun Nakamura, Brian F. Pachkowski, Asoka Ranasinghe, Avram Gold, Louise M. Ball, and James A. Swenberg. 2005. Analysis of M(1)G-dR in DNA by aldehyde reactive probe labeling and liquid chromatography tandem mass spectrometry. Chemical Research in Toxicology. (http://pubs.acs.org/journals/crtoec/index.htm l) 18(1):51-60.

Kim, Han S. and Frederic K. Pfaender. 2005. Effects of Microbially Mediated Redox Conditions on PAH-Soil Interactions. Environmental Science and Technology. (http://pubs.acs.org/journals/esthag/) 39(23):9189-9196.

Lan, Qing, Luoping Zhang, Fran Hakim, Min Shen, Sarfraz Memon, Guilan Li, Roel Vermeulen, Martyn T. Smith, Stephen M. Rappaport, Richard B. Hayes, Martha S. Linet, Songnian Yin, Nathaniel Rothman, and Charles S. Rabkin. 2005. Lymphocyte toxicity and T cell receptor excision circles in workers exposed to benzene. Chemico-Biological Interactions. (http://www.sciencedirect.com/science/journal/ 00092797) 153-154:111-115.

Lan, Qing, Luoping Zhang, Min Shen, Martyn T. Smith, Guilan Li, Roel Vermeulen, Stephen M. Rappaport, Matthew S. Forrest, Richard B. Hayes, Martha S. Linet, Mustafa Dosemeci, Blanche P. Alter, Rona S. Weinberg, Songnian Yin, Meredith Yeager, Robert Welch, Suramya Waidyanatha, Sungkyoon Kim, Stephen Chanock, and Nathaniel Rothman. 2005. Polymorphisms in Cytokine and Cellular Adhesion Molecule Genes and Susceptibility to Hematotoxicity among Workers Exposed to Benzene. Cancer Research. (http://cancerres.aacrjournals.org/) 65(20):9574-9581.

Li, Huina, Chongxun Pan, and Cass T. Miller. 2005. Pore-scale investigation of viscous coupling effects for two-phase flow in porous media. Physical Review E: Statistical, Nonlinear, and Soft Matter Physics. (http://pre.aps.org/) 72(2pt2):26705-26719.

Li, Yu, Robert C. Millikan, Douglas A. Bell, Lisa Cui, Chiu-Kit J. Tse, Beth Newman, and Kathleen Conway. 2005. Polychlorinated biphenyls, cytochrome P450 1A1 (CYP1A1) polymorphisms, and breast cancer risk among African American women and white women in North Carolina: a population-based case-control study. Breast Cancer Research. (http://breast-cancer-research.com/) 7(1):R12-R18.

Lin, Chia-Hua, Hong-Tsee Leow, Shih-Chien Huang, Jun Nakamura, James A. Swenberg, and Po-Hsiung Lin. 2005. Induction of cytotoxicity, aldehydic DNA lesions, and poly(ADP-ribose) polymerase-1 activation by catechol derivatives of pentachlorophenol in calf thymus DNA and in human breast cancer cells. Chemical Research in Toxicology. (http://pubs.acs.org/journals/crtoec/index.htm l) 18(2):257-264.

Miller, Cass T. and William G. Gray. 2005. Thermodynamically constrained averaging theory approach for modeling flow and transport phenomena in porous medium systems: 2. Foundation. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 28(2):181-202.

Olea, Ricardo A. and George Christakos. 2005. Duration of Urban Mortality for the 14th-Century Black Death Epidemic. Human Biology. 77(3):291-303.

Pravecek, Tasha L., Russell F. Christman, and Frederic K. Pfaender. 2005. Impact of imposed anaerobic conditions and microbial activity on aqueous-phase solubility of polycyclic aromatic hydrocarbons from soil. Environmental Toxicology and Chemistry. (http://etc.allenpress.com/entconline/?request =index-html) 24(2):286-293.

Rappaport, Stephen M., Suramya Waidyanatha, Karen Yeowell-O’Connell, Nathaniel Rothman, Martyn T. Smith, Luoping Zhang, Qingshan Qu, Roy Shore, Gui-Lan Li, and Songnian Yin. 2005. Protein adducts as biomarkers of human benzene metabolism. Chemico-Biological Interactions. (http://www.sciencedirect.com/science/journal/ 00092797) 153-154:103-109.

Singleton, David, Sabrina N. Powell, Ramiah Sangaiah, Avram Gold, Louise M. Ball, and Michael D. Aitken. 2005. Stable-isotope probing of bacteria capable of degrading salicylate, naphthalene, or phenanthrene in a bioreactor treating contaminated soil. Applied and Environmental Microbiology. (http://aem.asm.org/) 71(3):1202-1209.

Waidyanatha, Suramya and Stephen M. Rappaport. 2005. Investigation of cysteinyl protein adducts of benzene diolepoxide. Chemico-Biological Interactions. (http://www.sciencedirect.com/science/journal/ 00092797) 153-154:261-266.

Waidyanatha, Suramya, Ramiah Sangaiah, and Stephen M. Rappaport. 2005. Characterization and quantification of cysteinyl adducts of benzene diol epoxide. Chemical Research in Toxicology. (http://pubs.acs.org/journals/crtoec/index.htm l) 18(7):1178-1185.

Wu, Renan, Suramya Waidyanatha, Alistair P. Henderson, Berrin Serdar, Yuxin Zheng, and Stephen M. Rappaport. 2005. Determination of dihydroxynaphthalenes in human urine by gas chromatographymass spectrometry. Journal Of Chromatography B-Analytical Technologies In The Biomedical And Life Sciences. 826(1-2):206-213.

Ye, Wenjie, Ramiah Sangaiah, Diana E. Degen, Avram Gold, Karupiah Jayaraj, Karl M. Koshlap, Gunnar Boysen, and Louise M. Ball. 2005. A 2-Iminohydantoin is the major product from DMDO oxidation of Guanine. In: Superfund Research Program Annual Meeting, January 12-13. New York Academy of Medicine, New York, NY.

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2004

Casteel, Michael J., Karupiah Jayaraj, Avram Gold, Louise M. Ball, and Mark D. Sobsey. 2004. Photoinactivation of hepatitis A virus by synthetic porphyrins. Photochemistry and Photobiology. (http://www.blackwellpublishing.com/journal.as p?ref=0031-8655&site=1) 80(2):294-300.

Chao, Yi-Chun E. and Leena A. Nylander-French. 2004. Determination of keratin protein in a tape-stripped skin sample from jet fuel exposed skin. Annals of Occupational Hygiene. (http://www.sciencedirect.com/science/journal/ 00034878) 48(1):65-73.

Christakos, George. 2004. A sociological approach to the state of stochastic hydrogeologys. Stochastic Environmental Research and Risk Assessment. (http://link.springer-ny.com/link/service/jour nals/00477/index.htm) 18(4):274-277.

Christakos, George, Alexander Kolovos, Marc L. Serre, and Fred Vukovich. 2004. Total ozone mapping by integrating databases from remote sensing instruments and empirical models. IEEE Transactions on Geosciences & Remote Sensing. (http://www.ieee.org/organizations/pubs/transa ctions/tgrs.htm) 42(5):991-1008.

Douaik, Ahmed, Marc Van Meirvenne, Tibor Toth, and Marc L. Serre. 2004. Space-time mapping of soil salinity using probabilistic bayesian maximum entropy. Stochastic Environmental Research and Risk Assessment. (http://link.springer-ny.com/link/service/jour nals/00477/index.htm) 18(4):219-227.

Fowler, Kathleen R., Carl T. Kelley, Cass T. Miller, Christopher E. Kees, Robert W. Darwin, Jill P. Reese, Matthew W. Farthing, and Mark S C Reed. 2004. Solution of a well-field design problem with implicit filtering. Optimization and Engineering. (http://www.cas.mcmaster.ca/~terlaky/OPTE/) 5(2):207-234.

Gray, William G. and Cass T. Miller. 2004. Examination of Darcy’s law for flow in porous media with variable porosity. Environmental Science and Technology. (http://pubs.acs.org/journals/esthag/) 38(22):5895-5901.

Ham, Amy-Joan L., Bevin P. Engelward, Hasan Koc, Ramiah Sangaiah, Lisiane B. Meira, Leona D. Samson, and James A. Swenberg. 2004. New immunoaffinity-LC-MS/MS methodology reveals that Aag null mice are deficient in their ability to clear 1,N-6-etheno-deoxyadenosine DNA lesions from lung and liver in vivo. DNA Repair. 3(3):257-265.

Hu, Chiung-Wen, Ming-Tsang Wu, Mu-Rong Chao, Chih-Hong Pan, Chien-Jen Wang, James A. Swenberg, and Kuen-Yuh Wu. 2004. Comparison of analyses of urinary 8-hydroxy-2 ‘-deoxyguanosine by isotope-dilution liquid chromatography with electrospray tandem mass spectrometry and by enzyme-linked immunosorbent assay. Rapid Communications in Mass Spectrometry. (http://www.wileyeurope.com/WileyCDA/WileyTitl e/productCd-RCM.html) 18(4):505-510.

Johnson, Deona N., Joseph A. Pedit, and Cass T. Miller. 2004. Efficient, near-complete removal of DNAPL from three- dimensional, heterogeneous porous media using a novel combination of treatment technologies. Environmental Science and Technology. (http://pubs.acs.org/journals/esthag/) 38(19):5149-5156.

Kolovos, Alexander, George Christakos, Dionissios Hristopulos, and Marc L. Serre. 2004. Methods for generating non-separable spatiotemporal covariance models with potential environmental applications. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 27(8):815-830.

Kovitz, Jordan L. and George Christakos. 2004. Assimilation of fuzzy data by the BME method. Stochastic Environmental Research and Risk Assessment. (http://link.springer-ny.com/link/service/jour nals/00477/index.htm) 18(2):79-90.

Kovitz, Jordan L. and George Christakos. 2004. Spatial statistics of clustered data. Stochastic Environmental Research and Risk Assessment. (http://link.springer-ny.com/link/service/jour nals/00477/index.htm) 18(3):147-166.

Lan, Qing, Luoping Zhang, Gui-Lan Li, Roel Vermeulen, Rona S. Weinberg, Mustafa Dosemeci, Stephen M. Rappaport, Min Shen, Blanche P. Alter, Yongji Wu, William Kopp, Suramya Waidyanatha, Charles S. Rabkin, Weihong Guo, Stephen Chanock, Richard B. Hayes, Martha S. Linet, Sungkyoon Kim, Songnian Yin, Nathaniel Rothman, and Martyn T. Smith. 2004. Hematotoxicity in Workers Exposed to Low Levels of Benzene. Science. (http://www.sciencemag.org/) 306(5702):1774-1776.

Landrigan, Philip J., Paul J. Lioy, George Thurston, Gertrud S. Berkowitz, Lung Chi Chen, Steven N. Chillrud, Stephen H. Gavett, Panos G. Georgopoulos, Alison S. Geyh, Stephen M. Levin, Frederica Perera, Stephen M. Rappaport, Christopher Small, and the NIEHS World Trade Center Working Group. 2004. Health and environmental consequences of the world trade center disaster. Environmental Health Perspectives. 112(6):731-739.

Law, D.G., Marc L. Serre, George Christakos, Peter A. Leone, and William C. Miller. 2004. Spatial analysis and mapping of sexually transmitted diseases to optimise intervention and prevention strategies. Sexually Transmitted Infections. (http://sti.bmjjournals.com/) 80(4):294-299.

Li, Yu, Robert C. Millikan, Douglas A. Bell, Lisa Cui, Chiu-Kit J. Tse, Beth Newman, and Kathleen Conway. 2004. Cigarette smoking, cytochrome P4501A1 polymorphisms, and breast cancer among African-American and white women. Breast Cancer Research. (http://breast-cancer-research.com/) 6(4):R460-R473.

Lin, Po-Hsiung, Ramiah Sangaiah, Asoka Ranasinghe, Louise M. Ball, James A. Swenberg, and Avram Gold. 2004. Synthesis of chlorinated and non-chlorinated biphenyl-2,3-and 3,4-catechols and their [H-2(3)]-isotopomers. Organic & Biomolecular Chemistry. (http://www.rsc.org/is/journals/current/obc/ob cpub.htm) 2(18):2624-2629.

Mattorano, Dino A., Lawrence L. Kupper, and Leena A. Nylander-French. 2004. Estimating dermal exposure to jet fuel (naphthalene) using adhesive tape strip samples. Annals of Occupational Hygiene. (http://www.sciencedirect.com/science/journal/ 00034878) 48(2):139-146.

Millikan, Robert C., Jon Player, Allan Rene de Cotret, Patricia Moorman, Gary Pittman, Vani Vannappagari, Chiu-Kit J. Tse, and Temitope Keku. 2004. Manganese superoxide dismutase Ala-9Val polymorphism and risk of breast cancer in a population-based case-control study of African Americans and whites. Breast Cancer Research. (http://breast-cancer-research.com/) 6(4):R264-R274.

Pan, Chongxun, Markus Hilpert, and Cass T. Miller. 2004. Lattice-Boltzmann simulation of two-phase flow in porous media. Water Resources Research. (http://www.agu.org/journals/wr/) 40(1)artno.:W01501.

Pan, Chongxun, Jan F. Prins, and Cass T. Miller. 2004. A high-performance lattice Boltzmann implementation to model flow in porous media. Computer Physics Communication. (http://www.cpc.cs.qub.ac.uk/cpc/) 158(2):89-105.

Pleil, Joachim D., Alan F. Vette, Brent A. Johnson, and Stephen M. Rappaport. 2004. Air levels of carcinogenic polycyclic aromatic hydrocarbons after the World Trade Center disaster. Proceedings of the National Academy of Sciences of the United States of America (PNAS). (http://www.pnas.org/) 101(32):11685-11688.

Pleil, Joachim D., Alan F. Vette, Brent A. Johnson, and Stephen M. Rappaport. 2004. Assaying particle-bound polycyclic aromatic hydrocarbons from archived PM2.5 filters. Journal of Chromatography A. (http://www.sciencedirect.com/science/journal/ 00219673) 1033(1):9-17.

Rappaport, Stephen M. and Lawrence L. Kupper. 2004. Variability of environmental exposures to volatile organic compounds. Journal of Exposure Analysis and Environmental Epidemiology. (http://www.nature.com/jes/index.html) 14(1):92-107.

Rappaport, Stephen M., Suramya Waidyanatha, and Berrin Serdar. 2004. Naphthalene and its biomarkers as measures of occupational exposure to polycyclic aromatic hydrocarbons. Journal of Environmental Monitoring. (http://www.rsc.org/Publishing/Journals/em/ind ex.asp) 6(5):413-416.

Rusyn, Ivan, Shoji Asakura, Brian F. Pachkowski, Blair U. Bradford, Mikhail F. Denissenko, Jeffrey M. Peters, Steven M. Holland, Janardan K. Reddy, Michael L. Cunningham, and James A. Swenberg. 2004. Expression of base excision DNA repair genes is a sensitive biomarker for in vivo detection of chemical-induced chronic oxidative stress: Identification of the molecular source of radicals responsible for DNA damage by peroxisome proliferators. Cancer Research. (http://cancerres.aacrjournals.org/) 64(3):1050-1057.

Savelieva, Elena A., Vasiliy V. Demyanov, Mikhail F. Kanevski, Marc L. Serre, and George Christakos. 2004. BME application for uncertainty assessment of the Chernobyl fallouts. Geoderma. (http://www.sciencedirect.com/science/journal/ 00167061) 128(3-4):312-324.

Serdar, Berrin, Peter P. Egeghy, Roger L. Gibson, and Stephen M. Rappaport. 2004. Dose-dependent production of urinary naphthols among workers exposed to jet fuel (JP-8). Environmental Health Perspectives. 46(3):234-244.

Slikker, William, Matthew S. Bogdanffy, James S. Bus, Steven D. Cohen, Rory B. Conolly, Raymond M. David, Nancy G. Doerrer, David C. Dorman, David W. Gaylor, Dale Hattis, John M. Rogers, R. Woodrow Setzer, James A. Swenberg, Kendall Wallace, and Melvin E. Andersen. 2004. Dose-dependent transitions in mechanisms of toxicity. Toxicology and Applied Pharmacology. (http://www.academicpress.com/tap) 201(3):203-225.

Swenberg, James A. 2004. Toxicological considerations in the application and interpretation of DNA adducts in epidemiological studies. IARC Scientific Publications. 157:237-246.

Vermeulen, Roel, Guilan Li, Qing Lan, Mustafa Dosemeci, Stephen M. Rappaport, Xu Bohong, Martyn T. Smith, Luoping Zhang, Richard B. Hayes, Martha S. Linet, Ruidong Mu, Lan Wang, Jianing Xu, Songnian Yin, and Nathaniel Rothman. 2004. Detailed Exposure Assessment for a Molecular Epidemiology Study of Benzene in Two Shoe Factories in China. Annals of Occupational Hygiene. (http://www.sciencedirect.com/science/journal/ 00034878) 48(2):105-116.

Waidyanatha, Suramya, Nathaniel Rothman, Guilan Li, Martyn T. Smith, Songnian Yin, and Stephen M. Rappaport. 2004. Rapid determination of six urinary benzene metabolites in occupationally exposed and unexposed subjects. Analytical Biochemistry. (http://www.sciencedirect.com/science/journal/ 00032697) 327(2):184-199.

Waidyanatha, Suramya, Yuxin Zheng, Berrin Serdar, and Stephen M. Rappaport. 2004. Albumin adducts of naphthalene metabolites as biomarkers of exposure to polycyclic aromatic hydrocarbons. Cancer Epidemiology Biomarkers & Prevention. (http://cebp.aacrjournals.org/) 13(1):117-124.

Zielinska-Park, Joanna, Jun Nakamura, James A. Swenberg, and Michael D. Aitken. 2004. Aldehydic DNA lesions in calf thymus DNA and HeLa S3 cells produced by bacterial quinone metabolites of fluoranthene and pyrene. Carcinogenesis. (http://carcin.oupjournals.org/) 25(9):1727-1733.

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2003

Albertini, Richard, Harvey Clewell, Matthew W. Himmelstein, Eric J. Morinello, Stephen Olin, Julian Preston, Louis Scarano, Martyn T. Smith, James A. Swenberg, Raymond R. Tice, and Curtis Travis. 2003. The use of non-tumor data in cancer risk assessment: reflections on butadiene, vinyl chloride, and benzene. Regulatory Toxicology and Pharmacology. 37(1):105-132.

Anderson, Daniel M., Richard M. McLaughlin, and Cass T. Miller. 2003. The averaging of gravity currents in porous media. Physics of Fluids. 15(10):2810-2829.

Barbin, Alain, Hiroko Ohgaki, Jun Nakamura, Michael Kurrer, Paul Kleihues, and James A. Swenberg. 2003. Endogenous deoxyribonucleic acid (DNA) damage in human tissues: A comparison of ethenobases with aldehydic DNA lesions. Cancer Epidemiology Biomarkers & Prevention. (http://cebp.aacrjournals.org/) 12(11):1241-1247.

Choi, Kyung-Mee, Marc L. Serre, and George Christakos. 2003. Efficient mapping of California mortality fields at different spatial scales. Journal of Exposure Analysis and Environmental Epidemiology. (http://www.nature.com/jes/index.html) 13(2):120-133.

Christakos, George. 2003. Another look at the conceptual fundamentals of porous media upscaling. Stochastic Environmental Research and Risk Assessment. (http://link.springer-ny.com/link/service/jour nals/00477/index.htm) 17(5):276-290.

Christakos, George. 2003. Critical conceptualism in environmental modeling and prediction. Environmental Science and Technology. (http://pubs.acs.org/journals/esthag/) 37(20):4685-4693.

Christakos, George. 2003. Soil behaviour under dynamic loading conditions: experimental procedures and statistical trends. Stochastic Environmental Research and Risk Assessment. (http://link.springer-ny.com/link/service/jour nals/00477/index.htm) 17(3):175-190.

Christakos, George. 2003. The role of conceptual framworks in hydrologic research and development. In: Calibration & Reliability in Groundwater Modelling: A Few Steps Closer to Reality. IAHS Publishing, 277 Oxfordshire, United Kingdom. pp.277-285.

Christakos, George, Alexander Kolovos, Marc L. Serre, and Fred Vukovich. 2003. Generating high spatial resolution analyses of SBUV stratospheric ozone for calculating the tropospheric ozone residual (TOR). In: Proceedings of the IEEE/IGARRA, 21-25 July. Toulouse, France.

Dalla, Elisa, Markus Hilpert, Cass T. Miller, and Demetrio Pitea. 2003. Modelling the Dissolution of Non-Aqueous Phase Liquid Blobs in Sphere Packings. Annali di Chimica. 93(7-8):631-638.

Egeghy, Peter P., L. Hauf-Cabalo, Roger L. Gibson, and Stephen M. Rappaport. 2003. Benzene and naphthalene in air and breath as indicators of exposure to jet fuel. Occupational and Environmental Medicine. 60(12):969-976.

Farthing, Matthew W., Christopher E. Kees, and Cass T. Miller. 2003. Mixed Finite Element Methods and Higher Order Temporal Approximations for Variably Saturated Groundwater Flow. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 26(4):373-394.

Farthing, Matthew W., Christopher E. Kees, T.S. Coffey, Carl T. Kelley, and Cass T. Miller. 2003. Efficient steady-state solution techniques for variably saturated groundwater flow. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 26(8):833-849.

Gold, Avram, Tae-Gyu Nam, Karupiah Jayaraj, Ramiah Sangaiah, David G. Klapper, Louise M. Ball, John E. French, and Leena A. Nylander-French. 2003. Synthesis of S-aryl-D,L-cysteines and incorporation into keratin sequences. Organic Preparations and Procedures International. 35(4):375-382.

Hilpert, Markus, Roland Glantz, and Cass T. Miller. 2003. Calibration of a Pore-Network Model by a Pore-Morphological Analysis. Transport in Porous Media. 51(3):267-285.

Hilpert, Markus, Cass T. Miller, and William G. Gray. 2003. Stability of a fluid-fluid interface in a biconical pore segment. Journal of Colloid and Interface Science. (http://www.academicpress.com/jcis) 267(2):397-407.

Horton, Julie K., Donna F. Joyce-Gray, Brian F. Pachkowski, James A. Swenberg, and Samuel H. Wilson. 2003. Hypersensitivity of DNA polymerase beta null mouse fibroblasts reflects accumulation of cytotoxic repair intermediates from site-specific alkyl DNA lesions. DNA Repair. 2(1):27-48.

Imhoff, Paul T., Matthew W. Farthing, and Cass T. Miller. 2003. Modeling NAPL dissolution fingering with upscaled mass transfer rate coefficients. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 26(10):1097-1111.

Kanney, Joseph F., Cass T. Miller, and D. Andrew Barry. 2003. Comparison of Fully Coupled Approaches for Approximating Nonlinear Transport and Reaction Problems. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 26(4):353-372.

Kanney, Joseph F., Cass T. Miller, and Carl T. Kelley. 2003. Convergence of Iterative Split-Operator Approaches for Approximating Nonlinear Reactive Transport Problems. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 26(3):247-261.

Kees, Christopher E., Cass T. Miller, Eleanor W. Jenkins, and Carl T. Kelley. 2003. Versatile Two-Level Schwarz Preconditioners for Multiphase Flow. Computational Geosciences. 7(2):91-114.

Kolovos, Alexander, George Christakos, Marc L. Serre, and Dionissios Hristopulos. 2003. Representations of Non-Separable Spatiotemporal Covariance Models. In: Proceedings of the AGU (American Geophysical Union) Fall Meeting, December 8-12. San Francisco, CA.

Kovitz, Jordan L. and George Christakos. 2003. Assimilation of fuzzy data by the BME method. Stochastic Environmental Research and Risk Assessment. (http://link.springer-ny.com/link/service/jour nals/00477/index.htm) 18(2):79.

Law, Aaron M J and Michael D. Aitken. 2003. Bacterial chemotaxis to naphthalene desorbing from a nonaqueous liquid. Applied and Environmental Microbiology. (http://aem.asm.org/) 69(10):5968-5973.

Law, D.G., Marc L. Serre, George Christakos, Peter A. Leone, and William C. Miller. 2003. Analyzing and Mapping the Spatial Distribution of Sexually Transmitted Diseases for Public Health Intervention. In: Proceedings of the Congress of the international Society for Sexually Transmitted Disease Research, July 27-30. Ottawa, Canada.

Law, D.G., Marc L. Serre, Peter A. Leone, and William C. Miller. 2003. Spatiotemporal changes in chlamydial infection patterns and persistence of “the core”. In: Proceedings of the Congress of the international Society for Sexually Transmitted Disease Research, July 27-30. Ottawa, Canada.

Lee, S.J., Marc L. Serre, and George Christakos. 2003. Integrating soil pH as a risk factor in the spatial mapping of arsenic distributions in New England groundwater. In: Proceedings of the Superfund Research Program Annual Meeting: Integration Perspectives, November 9-12, 2003. Dartmouth College, Hanover, NH.

Li, Y., Gunnar Boysen, N.D. Dicheva, Patricia B. Upton, and James A. Swenberg. 2003. Effects of Free Unmodified Purine Basis, Guanine and Adenine, on Ionization of Three N-7 Guanine DNA Adducts Using LC/ESI/MS/MS. In: Proceedings of the American Society of Mass Spectrometry, 51st Annual Conference.

Lin, Po-Hsiung, Jun Nakamura, Shuji Yamaguchi, Shoji Asakura, and James A. Swenberg. 2003. Aldehydic DNA lesions induced by catechol estrogens in calf thymus DNA. Carcinogenesis. (http://carcin.oupjournals.org/) 24(6):1133-1141.

Mountcastle, Sally B., Marc L. Serre, R.W. Ryder, and S.S. Weir. 2003. A geographic analysis of high STI Transmission aresa in Cumberland County, North Carolina. In: Proceedings of the Congress of the international Society for Sexually Transmitted Disease Research, July 27-30. Ottawa, Canada.

Nakamura, Jun and James A. Swenberg. 2003. Aldehyde Reactive Probe-Slot Blot Assay to quantitate DNA lesions caused by oxidative stress. In: Methods in Biological Oxidative Stress. Humana Press, pp.109-115.

Nakamura, Jun, Shoji Asakura, Susan D. Hester, Gilbert de Murcia, Keith W. Caldecott, and James A. Swenberg. 2003. Quantitation of intracellular NAD(P)H can monitor an imbalance of DNA single strand break repair in base excision repair deficient cells in real time. Nucleic Acids Research. (http://www3.oup.co.uk/nar/contents/) 31(17):e104.

Nakamura, Jun, Elizabeth R. Purvis, and James A. Swenberg. 2003. Micromolar concentrations of hydrogen peroxide induce oxidative DNA lesions more efficiently than millimolar concentrations in mammalian cells. Nucleic Acids Research. (http://www3.oup.co.uk/nar/contents/) 31(6):1790-1795.

Pachkowski, Brian F., Jun Nakamura, Y. Li, Ramiah Sangaiah, Avram Gold, and James A. Swenberg. 2003. An LC/MS Approach to the Differentiation of Aldehydic Deoxyribose Lesions. In: Proceedings of the American Association for Cancer Research Annual Meeting, 2003.

Pan, Chongxun. 2003. Lattice-Boltzmann simulation of two-phase flow in porous media. Water Resources Research. (http://www.agu.org/journals/wr/) 40(1)artno.:W01501.

Savelieva, Elena A., Vasiliy V. Demyanov, V.M. Kanevski, Marc L. Serre, and George Christakos. 2003. BME application for uncertainty assessment of the Chernobyl Fallouts. In: Proceedings Pedometrics 2003, the 5th Conference of the Provisional Commission on Pedometrics of the International Union of Soil Sciences, “Applications of Pedometrics”, September 10-12. Reading, United Kingdom.

Serdar, Berrin, Peter P. Egeghy, Suramya Waidyanatha, Roger L. Gibson, and Stephen M. Rappaport. 2003. Urinary biomarkers of exposure to jet fuel (JP-8). Environmental Health Perspectives. 111(14):1760-1764.

Serdar, Berrin, Suramya Waidyanatha, Ying Zheng, and Stephen M. Rappaport. 2003. Simultaneous determination of urinary 1- and 2-naphthols, 3- and 9-phenanthrols, and 1-pyrenol in coke oven workers. Biomarkers. (http://tandf.catchword.com/titles/1354750x.ht m) 8(20:93-109.

Serre, Marc L. and George Christakos. 2003. Efficient BME estimation of subsurface hydraulic properties using measurements of water table elevation in unidirectional flow. In: Calibration & Reliability in Groundwater Modelling: A Few Steps Closer to Reality. IAHS Publishing, 277 Oxfordshire, United Kingdom. pp.321-327.

Serre, Marc L., George Christakos, Alexander Kolovos, and Fred Vukovich. 2003. Imaging ozone distributions across space-time using satellite data and physical information. In: Proceedings of the AGU (American Geophysical Union) Fall Meeting, December 8-12. San Francisco, CA.

Serre, Marc L., George Christakos, Hongxia Li, and Cass T. Miller. 2003. A BME solution of the inverse problem for saturated groundwater flow. Stochastic Environmental Research and Risk Assessment. (http://link.springer-ny.com/link/service/jour nals/00477/index.htm) 17(6):354-369.

Serre, Marc L., Alexander Kolovos, George Christakos, and K. Modis. 2003. An application of the holistochastic human exposure methodology to naturally occurring arsenic in Bangladesh drinking water. Risk Analysis. (http://www.blackwellpublishing.com/journal.as p?ref=0272-4332) 23(3):515-528.

Tsai, Chin H., Po-Hsiung Lin, Melissa A. Troester, and Stephen M. Rappaport. 2003. Formation and removal of pentachlorophenol-derived protein adducts in rodent liver under acute, multiple, and chronic dosing regimens. Toxicological Sciences. (http://www3.oup.co.uk/toxsci/) 73(1):26-35.

Vanderford, M. and Frederic K. Pfaender. 2003. Toxicity, Persistence, and Influence of Pyrene-4,5-Dione on PAH Biodegradation. In: Proceedings of the Battelle Bioremediation Conference.

Waidyanatha, Suramya, Ying Zheng, and Stephen M. Rappaport. 2003. Determination of polypyclic aromatic hydrocarbons in urine of coke oven workers by headspace solid phase microextraction and gas chromatography-mass spectrometry. Chemico-Biological Interactions. (http://www.sciencedirect.com/science/journal/ 00092797) 145(2):165-174.

Williams, David E., George S. Bailey, Ashok Reddy, Jerry D. Hendricks, Aram Oganesian, Gayle A. Orner, Cliff B. Pereira, and James A. Swenberg. 2003. The rainbow trout (Oncorhynchus mykiss) tumor model: recent applications in low-dose exposures to tumor initiators and promoters. Toxicologic Pathology. (http://tpx.sagepub.com/) 31(Suppl.1):58-61.

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2002

Barry, D.Andrew, H. Prommer, Cass T. Miller, P.K. Engesgaard, A. Brun, and C. Zheng. 2002. Modelling the Fate of Oxidisable Organic Contaminants in Groundwater. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 25(8):945-983.

Christakos, George. 2002. On a deductive logic-based spatiotemporal random field theory. Probability Theory and Mathematical Statistics. 66:54-65.

Christakos, George. 2002. On the assimilation of uncertain physical knowledge bases: Bayesian and non-Bayesian techniques. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 25(8-12):1229-1246.

Christakos, George. 2002. On the assimilation of uncertain physical knowledge bases: Bayesian and non-Bayesian techniques. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 25(8-12):1257-1274.

Christakos, George. 2002. The study of uncertainty in life support systems. In: Encyclopedia of Life Support Systems. UNESCO, London, United Kingdom.

Dalla, Elisa, Markus Hilpert, and Cass T. Miller. 2002. Computation of the interfacial area for two-fluid porous medium systems. Journal of Contaminant Hydrology. (http://www.sciencedirect.com/science/journal/ 01697722) 56(1-2):25-48.

Egeghy, Peter P., Leena A. Nylander-French, Kristen K. Gwin, Irva Hertz-Picciotto, and Stephen M. Rappaport. 2002. Self-collected breath sampling for monitoring low-level benzene exposures among automobile mechanics. Annals of Occupational Hygiene. (http://www.sciencedirect.com/science/journal/ 00034878) 46(5):489-500.

Farthing, Matthew W., Christopher E. Kees, and Cass T. Miller. 2002. Mixed finite element methods and higher order temporal approximations. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 25(1):85-101.

Frontera-Suau, Roberto, K. Jeong, J. Park, T. Long, A. Law, Glenn W. Walters, and Michael D. Aitken. 2002. PAH biodegradation and microbial population dynamics in a bench-scale bioreactor treating soil from a former manufactured gas plant. In: Proceedings of The 102nd General Meeting of the American Society for Microbiology, May 19-23. Salt Lake, UT.

Hill, Edward H., Lawrence L. Kupper, and Cass T. Miller. 2002. Evaluation of Path-Length Estimators for Characterizing Multiphase Systems Using Polyenergetic X-ray Absorptiometery. Soil Science. (http://www.soilsci.com/) 167(11):703-719.

Hilpert, Markus, Roland Glantz, and Cass T. Miller. 2002. Calibration of a pore-network model by a pore-morphological analysis. Transport in Porous Media. 51(3):267-285.

Imhoff, Paul T., Matthew W. Farthing, Simon N. Gleyzer, and Cass T. Miller. 2002. The evolving interface between clean and NAPL-contaminated regions in two-dimensional porous media. Water Resources Research. (http://www.agu.org/journals/wr/) 38(6):1093.

Kees, Christopher E. and Cass T. Miller. 2002. Higher order time integration methods for two-phase flow. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 25(2):159-177.

Koc, Hasan and James A. Swenberg. 2002. Applications of mass spectrometry for quantitation of DNA adducts. Journal Of Chromatography B-Analytical Technologies In The Biomedical And Life Sciences. 778(1-2):323-343.

Kolovos, Alexander, George Christakos, Marc L. Serre, and Cass T. Miller. 2002. Computational Bayesian Maximum Entropy Solution of a Stochastic Advection-Reaction Equation in the Light of Site-Specific Information. Water Resources Research. (http://www.agu.org/journals/wr/) 38(12):1318.

Kukich, D.M., Robert Schoonhoven, Russell F. Christman, and Frederic K. Pfaender. 2002. Interactions of Natural Organic Matter with the Mineral Matrix of Soil. In: Proceedings of the International Humic Substances Society Meeting. Boston, MA.

Lin, Po-Hsiung, David K. La, Patricia B. Upton, and James A. Swenberg. 2002. Analysis of DNA adducts in rats exposed to pentachlorophenol. Carcinogenesis. (http://carcin.oupjournals.org/) 23(2):365-369.

Mayer, Alex S., Carl T. Kelley, and Cass T. Miller. 2002. Optimal Design for Problems Involving Flow and Transport in Saturated Subsurface Systems. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 25(8-12):1233-1256.

Miller, Cass T. and William G. Gray. 2002. Hydrogeological Research: Just Getting Started. Ground Water. (http://www.blackwellpublishing.com/journal.as p?ref=0017-467X&site=1) 40(3):224-231.

Millikan, Robert C. 2002. The changing face of epidemiology in the genomics era. Epidemiology. (http://www.epidem.com/) 13(4):472-480.

Morinello, Eric J., Amy-Joan L. Ham, Asoka Ranasinghe, Jun Nakamura, Patricia B. Upton, and James A. Swenberg. 2002. Molecular dosimetry and repair of N2,3-ethenoguanine in rats exposed to vinyl chloride. Cancer Research. (http://cancerres.aacrjournals.org/) 62:5189-5195.

Morinello, Eric J., Hasan Koc, Asoka Ranasinghe, and James A. Swenberg. 2002. Differential induction of N2,3-ethenoguanine in rat brain and liver after exposure to vinyl chloride. Cancer Research. (http://cancerres.aacrjournals.org/) 62:5183-5188.

Nam, Tae-Gyu, Ramiah Sangaiah, Avram Gold, Gregory D. Lacks, Leena A. Nylander-French, and John E. French. 2002. Synthesis of FMOC-protected S-arylcysteines and modified keratin sequence peptides as specific epitopes as immunogens. Polycyclic Aromatic Compounds. (http://www.tandf.co.uk/journals/titles/104066 38.html) 22(3-4):239-248.

Pan, Chongxun, Markus Hilpert, and Cass T. Miller. 2002. Pore-scale modeling of saturated permeabilities in random sphere packings. Physical Review. (http://pra.aps.org/) 64:066702.

Pedit, Joseph A., Randell B. Marx, Cass T. Miller, and Michael D. Aitken. 2002. Quantitative analysis of experiments on bacterial chemotaxis to naphthalene. Biotechnology and Bioengineering. (http://www.interscience.wiley.com/jpages/0006 -3592/) 78(6):626-634.

Pfaender, Frederic K. 2002. Interactions of Soil Mineral Matrices with Soil Organic Carbon and Microorganisms. In: Proceedings of the Workshop on Bound Residues of Organic Compounds in the Soil Environment. Lancaster, United Kingdom.

Prommer, H., G.B. Davis, D. Andrew Barry, and Cass T. Miller. 2002. Modelling the Fate of Petroleum Hydrocarbons in Groundwater. In: Proceedings of the Australian National Environmental Protection Council (NEPC), Site Contamination Technical Workshop, May 13-15. Adelaide, Australia.

Rappaport, Stephen M., Suramya Waidyanatha, Qingshan Qu, Roy Shore, Ximei Jin, Beverly Cohen, Lung Chi Chen, Assieh A. Melikian, Guilan Li, Songnian Yin, Huifang Yan, Bohong Xu, Ruidong Mu, Yuying Li, Xiaoling Zhang, and Keqi Li. 2002. Albumin adducts of benzene oxide and 1,4-benzoquinone as measures of human benzene metabolism. Cancer Research. (http://cancerres.aacrjournals.org/) 62(5):1330-1337.

Rappaport, Stephen M., Karen Yeowell-O’Connell, Martyn T. Smith, Mustafa Dosemeci, Richard B. Hayes, Luoping Zhang, Gui-Lan Li, Songnian Yin, and Nathaniel Rothman. 2002. Non-linear production of benzene oxide-albumin adducts with human exposure to benzene. Journal of Chromatography A. (http://www.sciencedirect.com/science/journal/ 00219673) 778:367-374.

Sobol, Robert W., David E. Watson, Jun Nakamura, F. Michael Yakes, Esther Hou, Julie K. Horton, Jennifer Wu, Bennett Van Houten, James A. Swenberg, Kenneth R. Tindall, Leona D. Samson, and Samuel H. Wilson. 2002. Mutations associated with base excision repair deficiency and methylation-induced genotoxic stress. Proceedings of the National Academy of Sciences of the United States of America (PNAS). (http://www.pnas.org/) 99(14):6860-6865.

Swenberg, James A. 2002. Toxicological considerations in the application and interpretation of DNA adducts in epidemiologic studies. IARC Scientific Publications. 157:237-246.

Swenberg, James A., Nadia Georgieva, Amy-Joan L. Ham, Hasan Koc, Eric J. Morinello, Asoka Ranasinghe, Patricia B. Upton, and Vernon Walker. 2002. Linking pharmacokinetics and biomarker data to mechanism of action in risk assessment. International Journal of Human and Ecological Risk Assessment. 8(6):1315-1338.

Swenberg, James A., Amy-Joan L. Ham, Hasan Koc, David K. La, Eric J. Morinello, Brian F. Pachkowski, Asoka Ranasinghe, and Patricia B. Upton. 2002. Methods for measuring DNA adducts and abasic sites II: Methods for measurement of DNA adducts. Current Protocols in Toxicology. 3.9.1-3.9.35.

Swenberg, James A., Amy-Joan L. Ham, K.S. McDorman, Eric J. Morinello, Jun Nakamura, and Robert Schoonhoven. 2002. Methods for measuring DNA adducts and abasic sites I: Isolation, purification, and analysis of DNA adducts in intact DNA. Current Protocols in Toxicology. 3.8.1-3.8.18.

Toraason, Mark, Mel Andersen, Matthew S. Bogdanffy, David Dankovic, Elaine M. Faustman, Paul Foster, Clay Frederick, Lynne Haber, Carole A. Kimmel, Steven Lewis, Roger McClellan, Ronald Melnick, Frank Mirer, Kevin Morgan, Val Schaeffer, Ellen K. Silbergeld, William Slikker, James A. Swenberg, and Harri Vainio. 2002. Improving risk assessment: Toxicological research needs. Human and Ecological Risk Assessment. (http://www.sciencedirect.com/science/journal/ 10807039) 8(6):1405-1419.

Troester, Melissa A., Andrew B. Lindstrom, Suramya Waidyanatha, Lawrence L. Kupper, and Stephen M. Rappaport. 2002. Stability of hemoglobin and albumin adducts of naphthalene oxide, 1,2-naphthoquinone, and 1,4-naphthoquinone. Toxicological Sciences. (http://www3.oup.co.uk/toxsci/) 68(2):314-321.

Tsai, Chin H., Po-Hsiung Lin, Suramya Waidyanatha, and Stephen M. Rappaport. 2002. Fractionation of protein adducts in rats and mice dosed with[(14)C]pentachlorophenol. Archives of Toxicology. (http://link.springer-ny.com/link/service/jour nals/00204/tocs.htm) 76(11):628-633.

Waidyanatha, Suramya, Melissa A. Troester, Andrew B. Lindstrom, and Stephen M. Rappaport. 2002. Measurement of hemoglobin and albumin adducts of naphthalene-1,2-oxide, 1,2-naphthoquinone and 1,4-naphthoquinone after administration of naphthalene to F344 rats. Chemico-Biological Interactions. (http://www.sciencedirect.com/science/journal/ 00092797) 141(3):189-210.

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2001

Christakos, George. 2001. Stochastic modelling in human exposure. In: Encyclopedia of Environmetrics. J. Wiley & Sons, Ltd., Chichester, United Kingdom. pp.1290-1296.

Christakos, George, Marc L. Serre, and Jordan L. Kovitz. 2001. BME representations of particulate matter in the state of California. Journal of Geophysical Research-Atmospheres. (http://www.agu.org/journals/jd/) 106(D9):9717-9732.

Christakos, George, Marc L. Serre, Vasiliy V. Demyanov, V.M. Kanevski, Elena A. Savelieva, S. Chernov, and V. Timonin. 2001. BME analysis of Neural network residual data from the Chernobyl fallout: Bayesian and Non-Bayesian approaches. In: Geostatistics for Environmental Applications. Kluwer Academy Publications, Dordrecht, Netherlands. pp.509-510.

D’Or, D., Patrick Bogaert, and George Christakos. 2001. Applications of BME to soil texture mapping. Stochastic Environmental Research and Risk Assessment. (http://link.springer-ny.com/link/service/jour nals/00477/index.htm) 15(1):87-100.

Duell, Eric J., Robert C. Millikan, Gary Pittman, Scott Winkel, Ruth M. Lunn, Chiu-Kit J. Tse, Allison Eaton, Harvey W. Mohrenweiser, Beth Newman, and Douglas A. Bell. 2001. Polymorphisms in the DNA repair gene XRCC1 and breast cancer. Cancer Epidemiology Biomarkers & Prevention. (http://cebp.aacrjournals.org/) 10:217-222.

Ham, Amy-Joan L., C. Zhan, Hasan Koc, R.J. Hass, and James A. Swenberg. 2001. Analysis of 1,N6-ethenodeoxyguanosine by immunoaffinity/LC/MS/MS. In: Proceedings of the 49th ASMS (American Society for Mass Spectrometry) Conference on Mass Spectrometry and Allied Topics. June 4-7. Chicago, IL.

Hill, Edward H., M. Moutier, J. Alfaro, and Cass T. Miller. 2001. Remediation of DNAPL pools using dense brine barrier strategies. Environmental Science and Technology. (http://pubs.acs.org/journals/esthag/) 35(14):3031-3039.

Hilpert, Markus and Cass T. Miller. 2001. Pore-morphology-based simulation of drainage in totally wetting porous media. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 24(3-4):243-255.

Hilpert, Markus, John F. McBride, and Cass T. Miller. 2001. Investigation of the residual-funicular nonwetting-phase-saturation relation. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 24:157-177.

Hristopulos, Dionissios and George Christakos. 2001. Practical calculation of non-Gaussian multivariate moments in BME analysis. Mathematical Geology. (http://www.wkap.nl/jrnltoc.htm/0882-8121) 33(5):543-568.

Jenkins, Eleanor W., Carl T. Kelley, Cass T. Miller, and Christopher E. Kees. 2001. An aggregation-based domain decomposition preconditioner for groundwater flow. SIAM Journal on Scientific Computing. (http://epubs.siam.org/sam-bin/dbq/toclist/SIS C) 23:430-441.

Kazunga, Chikoma, Michael D. Aitken, Avram Gold, and Ramiah Sangaiah. 2001. Fluoranthene-2,3- and -1,5-diones are novel products from the bacterial transformation of fluoranthene. Environmental Science and Technology. (http://pubs.acs.org/journals/esthag/) 35(5):917-922.

Lin, Po-Hsiung, Jun Nakamura, Shuji Yamaguchi, David K. La, and James A. Swenberg. 2001. Oxidative damage and direct adducts in calf thymus DNA induced by the pentachlorophenol metabolites, tetrachlorohydroquinone and tetrachloro-1,4-benzoquinone. Carcinogenesis. (http://carcin.oupjournals.org/) 22(4):627-634.

Lin, Po-Hsiung, Jun Nakamura, Shuji Yamaguchi, David K. La, Patricia B. Upton, and James A. Swenberg. 2001. Induction of direct adducts, apurinic/apyrimidinic sites, and oxidized bases in nuclear DNA of human HeLa S3 tumor cells by tetrachlorohydroquinone. Carcinogenesis. (http://carcin.oupjournals.org/) 22(4):635-639.

Morinello, Eric J., Amy-Joan L. Ham, Asoka Ranasinghe, Ramiah Sangaiah, and James A. Swenberg. 2001. Simultaneous quantitation of N2,3-ethenoguanine and 1,N2-ethenoguanine with immunoaffinity/gas chromatography/high resolution mass spectrometry. Chemical Research in Toxicology. (http://pubs.acs.org/journals/crtoec/index.htm l) 14:327-334.

Nam, Tae-Gyu, Ramiah Sangaiah, Avram Gold, Gregory D. Lacks, Leena A. Nylander-French, and John E. French. 2001. Synthesis of FMOC-protected S-aryclysteines and modified keratin sequence peptides as specific epitopes as immunogens. In: Proceedings of the 18th International Symposiium on Polycyclic Aromatic Compounds, Sept 9-13. Cincinnati, OH.

Nylander-French, Leena A., Gregory D. Lacks, and Dino A. Mattorano. 2001. Quantification of naphthalene dermal exposure using non-invasive tape stripping of the stratum corneum, extraction, and normalization against keratin. Arbete och Halsa. 10:23-24.

Roper, J.Chadwick and Frederic K. Pfaender. 2001. Pyrene and chrysene fate in surface soil and sand microcosms. Environmental Toxicology and Chemistry. (http://etc.allenpress.com/entconline/?request =index-html) 20(2):223-230.

Schulz, Mark R., Irva Hertz-Picciotto, Lori Todd, and Louise M. Ball. 2001. Reconciling animal and human data in a cancer risk assessment of acrylonitrile. Scandinavian Journal of Work, Environment and Health. (http://www.sjweh.fi/) 27(1):14-20.

Serre, Marc L., George Christakos, J. Howes, and A. Gamal. 2001. Powering an Egyptian air quality information system with the BME space/time analysis toolbox: Results from the Cairo baseline year study. In: Geostatistics for Environmental Applications. Kluwer Academy Publications, Dordrecht, Netherlands. pp.91-100.

Taylor, Douglas J., Lawrence L. Kupper, Stephen M. Rappaport, and Robert H. Lyles. 2001. A mixture model for occupational exposure mean testing with a limit of detection. Biometrics. (http://stat.tamu.edu/Biometrics/) 57(3):681-699.

Troester, Melissa A., Lawrence L. Kupper, and Stephen M. Rappaport. 2001. Comparison of non-linear and linear models for estimating haemoglobin adduct stability. Biomarkers. (http://tandf.catchword.com/titles/1354750x.ht m) 6(4):251-261.

Tsai, Chin H., Po-Hsiung Lin, Suramya Waidyanatha, and Stephen M. Rappaport. 2001. Characterization of metabolic activation of pentachlorophenol to quinones and semiquinones in rodent liver. Chemico-Biological Interactions. (http://www.sciencedirect.com/science/journal/ 00092797) 134(1):55-71.

Waidyanatha, Suramya, Nathaniel Rothman, Silvia Fustinoni, Martyn T. Smith, Richard B. Hayes, William E. Bechtold, Mustafa Dosemeci, Gui-Lan Li, Songnian Yin, and Stephen M. Rappaport. 2001. Urinary benzene as a biomarker of exposure among occupationally exposed and unexposed subjects. Carcinogenesis. (http://carcin.oupjournals.org/) 22:279-286.

Walters, Glenn W. and Michael D. Aitken. 2001. Surfactant-enhanced solubilization and anaerobic biodegradation of 1,1,1-trichloro-2,2-bis(p-chlorophenyl)-ethane (DDT) in contaminated soil. Water Environment Research. (http://www.wef.org/ScienceTechnologyResources /Publications/WER/) 73(1):15-23.

Weaver, M.A., Lawrence L. Kupper, Douglas J. Taylor, Hans Kromhout, Pam Susi, and Stephen M. Rappaport. 2001. Simultaneous assessment of occupational exposures from multiple worker groups. Occupational Hygiene. 45(7):525-542.

Yeowell-O’Connell, Karen, Nathaniel Rothman, Suramya Waidyanatha, Martyn T. Smith, Richard B. Hayes, Gui-Lan Li, William E. Bechtold, Mustafa Dosemeci, Luoping Zhang, Songnian Yin, and Stephen M. Rappaport. 2001. Protein adducts of 1,4-benzoquinone and benzene oxide among smokers and nonsmokers exposed to benzene in China. Cancer Epidemiology Biomarkers & Prevention. (http://cebp.aacrjournals.org/) 10:831-838.

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2000

Boivin-Angele, Sandra, Lydie Lefrancois, Olivier Froment, Andreas Spiethoff, Matthew S. Bogdanffy, Kurt Wegener, Horst Wesch, Alain Barbin, Brigitte Bancel, Christian Trepo, Helmut Bartsch, James A. Swenberg, and Marie-Jean Marion. 2000. Ras gene mutations in vinyl chloride-induced liver tumours are carcinogen-specific but vary with cell type and species. International Journal of Cancer. (http://www3.interscience.wiley.com/cgi-bin/jt oc?ID=29331) 85(2):223-227.

Christakos, George and V. Papanicolaou. 2000. Norm-dependent covariance permissibility of weakly homogeneous spatial random fields. Stochastic Environmental Research and Risk Assessment. (http://link.springer-ny.com/link/service/jour nals/00477/index.htm) 14(6):471-478.

Christakos, George and Marc L. Serre. 2000. BME analysis of spatiotemporal particulate matter distributions in North Carolina. Atmospheric Environment. (http://www.sciencedirect.com/science/journal/ 13522310) 34(20):3393-3406.

Christakos, George and Marc L. Serre. 2000. Spatiotemporal analysis of environmental exposure-health effect associations. Journal of Exposure Analysis and Environmental Epidemiology. (http://www.nature.com/jes/index.html) 10(2):168-187.

Christakos, George, Dionissios Hristopulos, and Patrick Bogaert. 2000. On the physical geometry concept at the basis of space/time geostatistical hydrology. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 23(8):799-810.

Christakos, George, Dionissios Hristopulos, and Alexander Kolovos. 2000. Stochastic flowpath analysis of multiphase flow in random porous media. SIAM Journal on Applied Mathematics. (http://epubs.siam.org/sam-bin/dbq/toclist/SIA P) 60:1520-1542.

Christakos, George, Marc L. Serre, Vasiliy V. Demyanov, V. Timonin, V.M. Kanevski, Elena A. Savelieva, and S. Chernov. 2000. BME analysis of neural network residual data from Chernobyl fallout: Bayesian and non-Bayesian approaches. In: Proceedings of GeoEnv2000 (3rd European Conference on Geostatistics for Environmental Applications).

D’Or, D., Patrick Bogaert, and George Christakos. 2000. Application of BME to soil texture mapping. Stochastic Environmental Research and Risk Assessment. (http://link.springer-ny.com/link/service/jour nals/00477/index.htm) 15(1):87-100.

Demyanov, Vasiliy V., V.M. Kanevski, Elena A. Savelieva, S. Chernov, V. Timonin, George Christakos, and Marc L. Serre. 2000. Neural network residual BME analysis of Chernobyl fallout-Part I: Analysis and modelling of non-linear trends in soft data using neural networks. In: Proceedings of GeoEnv2000 (3rd European Conference on Geostatistics for Environmental Applications).

Egeghy, Peter P., Rogelio Tornero-Velez, and Stephen M. Rappaport. 2000. Environmental and biological monitoring of benzene during self-service automobile refueling. Environmental Health Perspectives. 108:1195-1202.

Farthing, Matthew W. and Cass T. Miller. 2000. A comparison of high-resolution, finite-volume, adaptive-stencil schemes for simulating advective-dispersive transport. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 24:29-48.

Gray, William G. and Cass T. Miller. 2000. Comment on “Dynamics of Wetting Fronts in Porous Media”. Physical Review. (http://pra.aps.org/) E61:2150-2151.

Ham, Amy-Joan L., Asoka Ranasinghe, Hasan Koc, and James A. Swenberg. 2000. 4-Hydroxy-2-nonenal and ethyl linoleate from N2,3-ethenoguanine under peroxidizing conditions. Chemical Research in Toxicology. (http://pubs.acs.org/journals/crtoec/index.htm l) 13:1243-1250.

Hertz-Picciotto, Irva, H. Michael Arrighi, and Suh-Woan Hu. 2000. Does arsenic exposure increase the risk for circulatory disease?. American Journal of Epidemiology. (http://www.aje.oupjournals.org/) 151(2):174-181.

Hilpert, Markus and Cass T. Miller. 2000. Pore-morphology-based simulation of drainage in totally wetting porous media. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 24(3-4):243-255.

Hilpert, Markus, John F. McBride, and Cass T. Miller. 2000. Investigation of the residual-funicular nonwetting-phase-saturation relation. Advances in Water Resources. (http://www.sciencedirect.com/science/journal/ 03091708) 24(2):157-177.

Holt, Sharon, G. Roy, Soma R. Mitra, Patricia B. Upton, Matthew S. Bogdanffy, and James A. Swenberg. 2000. Deficiency of N-methylpurine-DNA-glycosylase expression in nonparenchymal cells, the target cell for vinyl chloride and vinyl fluoride. Mutation Research. (http://www.elsevier.com/wps/find/journaldescr iption.cws_home/522820/description#descriptio n) 460(2):105-115.

Kazunga, Chikoma and Michael D. Aitken. 2000. Products from the incomplete metabolism of pyrene by polycyclic aromatic hydrocarbon-degrading bacteria. Applied and Environmental Microbiology. (http://aem.asm.org/) 66:1917-1922.

Korte, Jeffrey E., Irva Hertz-Picciotto, Mark R. Schulz, Louise M. Ball, and Eric J. Duell. 2000. The Contribution of Benzene to Smoking-Induced Leukemia. Environmental Health Perspectives. 108(4):333-339.

Kovitz, Jordan L., George Christakos, and Marc L. Serre. 2000. BME analysis of space/time distributions of PM10 over California. In: Proceedings of ISEA (International Society of Exposure Analysis).

Lin, Po-Hsiung, Ramiah Sangaiah, Asoka Ranasinghe, Patricia B. Upton, David K. La, Avram Gold, and James A. Swenberg. 2000. Formation of quinonoid-derived protein adducts in the liver and brain of Sprague-Dawley rats treated with 2,2′,5,5′-tetrachlorobiphenyl. Chemical Research in Toxicology. (http://pubs.acs.org/journals/crtoec/index.htm l) 13(8):710-718.

Marx, Randell B. and Michael D. Aitken. 2000. A material balance approach for modeling bacterial chemotaxis to a consumable substrate in the capillary assay. Biotechnology and Bioengineering. (http://www.interscience.wiley.com/jpages/0006 -3592/) 68:308-315.

Miller, Cass T., Edward H. Hill, and M. Moutier. 2000. Remediation of subsurface systems contaminated with dense organic liquids. Environmental Science and Technology. (http://pubs.acs.org/journals/esthag/) 34(4):719-724.

Nakamura, Jun, David K. La, and James A. Swenberg. 2000. 5′-Nicked Apurinic/Apyrimidinic Sites Are Resistant to b-Elimination by b-Polymerase and Are Persistent in Human Cultured Cells after Oxidative Stress. Journal of Biological Chemistry. (http://www.jbc.org/) 275(8):5323-5328.

Nylander-French, Leena A. 2000. A tape-stripping method for measuring dermal exposure to multifunctional acrylates. Annals of Occupational Hygiene. (http://www.sciencedirect.com/science/journal/ 00034878) 44:645-651.

Rusyn, Ivan, Mikhail F. Denissenko, Victoria A. Wong, Byron E. Butterworth, Michael L. Cunningham, Patricia B. Upton, Ronald G. Thurman, and James A. Swenberg. 2000. Expression of base excision repair enzymes in rat and mouse liver is induced by peroxisome proliferators and is dependent upon carcinogenic potency. Carcinogenesis. (http://carcin.oupjournals.org/) 21(12):2141-2145.

Serre, Marc L., George Christakos, and J. Howes. 2000. Powering an Egyptian air quality information system with the BME space/time analysis toolbox. In: Proceedings of GeoEnv2000 (3rd European Conference on Geostatistics for Environmental Applications).

Serre, Marc L., George Christakos, Vasiliy V. Demyanov, V.M. Kanevski, Elena A. Savelieva, S. Chernov, and V. Timonin. 2000. Neural network residual BME analysis of Chernobyl fallout-Part II: Analysis of the soft data residual using the BME method. In: Proceedings of GeoEnv2000 (3rd European Conference on Geostatistics for Environmental Applications).

Swenberg, James A., Nadia I. Christova-Gueoguieva, Patricia B. Upton, Asoka Ranasinghe, Nova A. Scheller, Kuen-Yuh Wu, Ten-Yang Yen, and Richard B. Hayes. 2000. Hemoglobin adducts as biomarkers of butadiene exposure and metabolism. HEI Research Report No. 92: 1,3-Butadiene and its metabolites: Interspecies comparison of carcinogenicity, mutagenicity and biomarkers. Part V. Hemoglobin adducts as biomarkers of butadiene exposure and metabolism. pp.191-219.

Swenberg, James A., Amy-Joan L. Ham, Hasan Koc, Eric J. Morinello, Asoka Ranasinghe, Natalia Tretyakova, Patricia B. Upton, and Kuen-Yuh Wu. 2000. DNA adducts: effects of low exposure to ethylene oxide, vinyl chloride and butadiene. Mutation Research. (http://www.elsevier.com/wps/find/journaldescr iption.cws_home/522820/description#descriptio n) 464(1):77-86.

Troester, Melissa A., Andrew B. Lindstrom, Suramya Waidyanatha, Lawrence L. Kupper, and Stephen M. Rappaport. 2000. Stability of hemoglobin and albumin adducts of benzene oxide and 1,4-benzoquinone after administration of benzene to F344 rats. Toxicological Sciences. (http://www3.oup.co.uk/toxsci/) 54:88-94.

Walker, Vernon, Kuen-Yuh Wu, Patricia B. Upton, Asoka Ranasinghe, Nova A. Scheller, Myung-Haeng Cho, Jane S. Vergnes, Thomas R. Skopek, and James A. Swenberg. 2000. Biomarkers of exposure and effect as indicators of potential carcinogenic risk arising from in vivo metabolism of ethylene to ethylene oxide. Carcinogenesis. (http://carcin.oupjournals.org/) 21(9):1661-1669.

Williams, Glenn A., Cass T. Miller, and Carl T. Kelley. 2000. Transformation approaches for simulating flow in variably saturated porous media. Water Resources Research. (http://www.agu.org/journals/wr/) 36(4):923-934.

Willson, Clinton S., O. Pau, Joseph A. Pedit, and Cass T. Miller. 2000. Mass transfer rate limitation effects on partitioning tracer tests. Journal of Contaminant Hydrology. (http://www.sciencedirect.com/science/journal/ 01697722) 45:79-97.